HL_7XNY_042

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

7XNY|1|L1|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_042 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1979

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7XNY|1|L1|G|2624
7XNY|1|L1|U|2625
7XNY|1|L1|U|2626
7XNY|1|L1|C|2627
7XNY|1|L1|U|2628
7XNY|1|L1|C|2629
7XNY|1|L1|U|2630
7XNY|1|L1|U|2631
7XNY|1|L1|U|2632

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22