HL_7XNY_057

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACGAGGGGCCCGGGGCGGGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUA*C

Length

103 nucleotides

Bulged bases

7XNY|1|L1|A|3962, 7XNY|1|L1|A|3966, 7XNY|1|L1|G|3970, 7XNY|1|L1|G|4035, 7XNY|1|L1|C|4037, 7XNY|1|L1|C|4038, 7XNY|1|L1|U|4044, 7XNY|1|L1|A|4046, 7XNY|1|L1|A|4047, 7XNY|1|L1|U|4049, 7XNY|1|L1|A|4053, 7XNY|1|L1|C|4054, 7XNY|1|L1|G|4002, 7XNY|1|L1|A|4003, 7XNY|1|L1|G|4004, 7XNY|1|L1|G|4005, 7XNY|1|L1|G|4006, 7XNY|1|L1|G|4007, 7XNY|1|L1|C|4008, 7XNY|1|L1|C|4009, 7XNY|1|L1|C|4010, 7XNY|1|L1|G|4011, 7XNY|1|L1|G|4012, 7XNY|1|L1|G|4013, 7XNY|1|L1|G|4014, 7XNY|1|L1|C|4015, 7XNY|1|L1|G|4016, 7XNY|1|L1|G|4017, 7XNY|1|L1|G|4018, 7XNY|1|L1|G|4019, 7XNY|1|L1|U|4020, 7XNY|1|L1|C|4021, 7XNY|1|L1|C|4022, 7XNY|1|L1|G|4023, 7XNY|1|L1|C|4024, 7XNY|1|L1|C|4025, 7XNY|1|L1|G|4026, 7XNY|1|L1|G|4027, 7XNY|1|L1|C|4028, 7XNY|1|L1|C|4029, 7XNY|1|L1|C|4030, 7XNY|1|L1|U|4031, 7XNY|1|L1|G|4032, 7XNY|1|L1|C|4033, 7XNY|1|L1|G|4034, 7XNY|1|L1|G|4035, 7XNY|1|L1|G|4036, 7XNY|1|L1|C|4037, 7XNY|1|L1|C|4038, 7XNY|1|L1|G|4042, 7XNY|1|L1|U|4044, 7XNY|1|L1|G|4045, 7XNY|1|L1|A|4046, 7XNY|1|L1|A|4047, 7XNY|1|L1|U|4049, 7XNY|1|L1|A|4053, 7XNY|1|L1|C|4054

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|L1|G|3955
7XNY|1|L1|G|3956
7XNY|1|L1|U|3957
7XNY|1|L1|G|3958
7XNY|1|L1|U|3959
7XNY|1|L1|A|3960
7XNY|1|L1|G|3961
7XNY|1|L1|A|3962
7XNY|1|L1|A|3963
7XNY|1|L1|U|3964
7XNY|1|L1|A|3965
7XNY|1|L1|A|3966
7XNY|1|L1|G|3967
7XNY|1|L1|U|3968
7XNY|1|L1|G|3969
7XNY|1|L1|G|3970
7XNY|1|L1|G|3971
7XNY|1|L1|A|3972
7XNY|1|L1|G|3973
7XNY|1|L1|G|3974
7XNY|1|L1|C|3975
7XNY|1|L1|C|3976
7XNY|1|L1|C|3977
7XNY|1|L1|G|4034
7XNY|1|L1|G|4035
7XNY|1|L1|G|4036
7XNY|1|L1|C|4037
7XNY|1|L1|C|4038
7XNY|1|L1|G|4039
7XNY|1|L1|C|4040
7XNY|1|L1|C|4041
7XNY|1|L1|G|4042
7XNY|1|L1|G|4043
7XNY|1|L1|U|4044
7XNY|1|L1|G|4045
7XNY|1|L1|A|4046
7XNY|1|L1|A|4047
7XNY|1|L1|A|4048
7XNY|1|L1|U|4049
7XNY|1|L1|A|4050
7XNY|1|L1|C|4051
7XNY|1|L1|C|4052
7XNY|1|L1|A|4053
7XNY|1|L1|C|4054
7XNY|1|L1|U|4055
7XNY|1|L1|A|4056
7XNY|1|L1|C|4057
7XNY|1|L1|G|4002
7XNY|1|L1|A|4003
7XNY|1|L1|G|4004
7XNY|1|L1|G|4005
7XNY|1|L1|G|4006
7XNY|1|L1|G|4007
7XNY|1|L1|C|4008
7XNY|1|L1|C|4009
7XNY|1|L1|C|4010
7XNY|1|L1|G|4011
7XNY|1|L1|G|4012
7XNY|1|L1|G|4013
7XNY|1|L1|G|4014
7XNY|1|L1|C|4015
7XNY|1|L1|G|4016
7XNY|1|L1|G|4017
7XNY|1|L1|G|4018
7XNY|1|L1|G|4019
7XNY|1|L1|U|4020
7XNY|1|L1|C|4021
7XNY|1|L1|C|4022
7XNY|1|L1|G|4023
7XNY|1|L1|C|4024
7XNY|1|L1|C|4025
7XNY|1|L1|G|4026
7XNY|1|L1|G|4027
7XNY|1|L1|C|4028
7XNY|1|L1|C|4029
7XNY|1|L1|C|4030
7XNY|1|L1|U|4031
7XNY|1|L1|G|4032
7XNY|1|L1|C|4033
7XNY|1|L1|G|4034
7XNY|1|L1|G|4035
7XNY|1|L1|G|4036
7XNY|1|L1|C|4037
7XNY|1|L1|C|4038
7XNY|1|L1|G|4039
7XNY|1|L1|C|4040
7XNY|1|L1|C|4041
7XNY|1|L1|G|4042
7XNY|1|L1|G|4043
7XNY|1|L1|U|4044
7XNY|1|L1|G|4045
7XNY|1|L1|A|4046
7XNY|1|L1|A|4047
7XNY|1|L1|A|4048
7XNY|1|L1|U|4049
7XNY|1|L1|A|4050
7XNY|1|L1|C|4051
7XNY|1|L1|C|4052
7XNY|1|L1|A|4053
7XNY|1|L1|C|4054
7XNY|1|L1|U|4055
7XNY|1|L1|A|4056
*
7XNY|1|L1|C|4057

Current chains

Chain L1

28S rRNA

Nearby chains