HL_7XNY_058

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AGCCCCGAGGGGCU

Length

14 nucleotides

Bulged bases

7XNY|1|L1|G|4099, 7XNY|1|L1|G|4104

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|L1|A|4098
7XNY|1|L1|G|4099
7XNY|1|L1|C|4100
7XNY|1|L1|C|4101
7XNY|1|L1|C|4102
7XNY|1|L1|C|4103
7XNY|1|L1|G|4104
7XNY|1|L1|A|4105
7XNY|1|L1|G|4106
7XNY|1|L1|G|4107
7XNY|1|L1|G|4108
7XNY|1|L1|G|4109
7XNY|1|L1|C|4110
7XNY|1|L1|U|4111

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain Lg

60S ribosomal protein L34

Chain SB

40S ribosomal protein S3a