HL_7XNY_063

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_063 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.0924

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

7XNY|1|L1|C|4270
7XNY|1|L1|A|4271
7XNY|1|L1|G|4272
7XNY|1|L1|A|4273
7XNY|1|L1|A|4274
7XNY|1|L1|G|4275
7XNY|1|L1|G|4276
7XNY|1|L1|G|4277

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LI

Ribosomal protein L10 isoform A

Chain LT

60S ribosomal protein L21

Chain Lo

60S ribosomal protein L36a