HL_7XNY_069

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

U(OMU)(OMG)(PSU)UCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_069 not in the Motif Atlas

Homologous match to HL_8C3A_064

Geometric discrepancy: 0.2781

The information below is about HL_8C3A_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7XNY|1|L1|U|4497
7XNY|1|L1|OMU|4498
7XNY|1|L1|OMG|4499
7XNY|1|L1|PSU|4500
7XNY|1|L1|U|4501
7XNY|1|L1|C|4502
7XNY|1|L1|A|4503

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3