HL_7XNY_073

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7XNY|1|L1|G|4694, 7XNY|1|L1|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_073 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0572

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7XNY|1|L1|C|4688
7XNY|1|L1|U|4689
7XNY|1|L1|G|4690
7XNY|1|L1|A|4691
7XNY|1|L1|A|4692
7XNY|1|L1|C|4693
7XNY|1|L1|G|4694
7XNY|1|L1|C|4695
7XNY|1|L1|C|4696
7XNY|1|L1|U|4697
7XNY|1|L1|C|4698
7XNY|1|L1|U|4699
7XNY|1|L1|A|4700
7XNY|1|L1|A|4701
7XNY|1|L1|G|4702

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40