HL_7XNY_087

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCUUCGCGGG

Length

10 nucleotides

Bulged bases

7XNY|1|S2|U|197, 7XNY|1|S2|C|201

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_087 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2914

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

7XNY|1|S2|C|195
7XNY|1|S2|C|196
7XNY|1|S2|U|197
7XNY|1|S2|U|198
7XNY|1|S2|C|199
7XNY|1|S2|G|200
7XNY|1|S2|C|201
7XNY|1|S2|G|202
7XNY|1|S2|G|203
7XNY|1|S2|G|204

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8