HL_7XNY_089

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

7XNY|1|S2|C|324, 7XNY|1|S2|C|325, 7XNY|1|S2|C|326

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_089 not in the Motif Atlas

Geometric match to HL_8UO6_007

Geometric discrepancy: 0.3344

The information below is about HL_8UO6_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

7XNY|1|S2|C|322
7XNY|1|S2|C|323
7XNY|1|S2|C|324
7XNY|1|S2|C|325
7XNY|1|S2|C|326
7XNY|1|S2|G|327
7XNY|1|S2|U|328
7XNY|1|S2|G|329

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6