HL_7XNY_090

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|S2|G|377
7XNY|1|S2|U|378
7XNY|1|S2|C|379
7XNY|1|S2|G|380
7XNY|1|S2|C|381
7XNY|1|S2|C|382
7XNY|1|S2|G|383
7XNY|1|S2|U|384
7XNY|1|S2|G|385
7XNY|1|S2|C|386
7XNY|1|S2|C|387

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11