HL_7XNY_116
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 7XNY|1|S2|G|1665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7XNY_116 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.3006
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7XNY|1|S2|G|1658
7XNY|1|S2|U|1659
7XNY|1|S2|C|1660
7XNY|1|S2|A|1661
7XNY|1|S2|U|1662
7XNY|1|S2|A|1663
7XNY|1|S2|A|1664
7XNY|1|S2|G|1665
7XNY|1|S2|C|1666
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SQ
- 40S ribosomal protein S16
- Chain ST
- 40S ribosomal protein S19
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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