HL_7XNY_117

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGUGCGCCCACGG*C

Length

14 nucleotides

Bulged bases

7XNY|1|S2|G|1771, 7XNY|1|S2|G|1764, 7XNY|1|S2|C|1765, 7XNY|1|S2|C|1766, 7XNY|1|S2|C|1767, 7XNY|1|S2|A|1768, 7XNY|1|S2|C|1769, 7XNY|1|S2|G|1770, 7XNY|1|S2|G|1771

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|S2|G|1759
7XNY|1|S2|G|1760
7XNY|1|S2|U|1761
7XNY|1|S2|G|1771
7XNY|1|S2|C|1772
7XNY|1|S2|G|1764
7XNY|1|S2|C|1765
7XNY|1|S2|C|1766
7XNY|1|S2|C|1767
7XNY|1|S2|A|1768
7XNY|1|S2|C|1769
7XNY|1|S2|G|1770
7XNY|1|S2|G|1771
*
7XNY|1|S2|C|1772

Current chains

Chain S2

18S rRNA

Nearby chains