HL_7XNY_120

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGGACUGUCCCCAGUGCG

Length

18 nucleotides

Bulged bases

7XNY|1|L1|G|1178, 7XNY|1|L1|U|1179, 7XNY|1|L1|C|1181, 7XNY|1|L1|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|L1|C|1172
7XNY|1|L1|G|1173
7XNY|1|L1|G|1174
7XNY|1|L1|A|1175
7XNY|1|L1|C|1176
7XNY|1|L1|U|1177
7XNY|1|L1|G|1178
7XNY|1|L1|U|1179
7XNY|1|L1|C|1180
7XNY|1|L1|C|1181
7XNY|1|L1|C|1182
7XNY|1|L1|C|1183
7XNY|1|L1|A|1184
7XNY|1|L1|G|1185
7XNY|1|L1|U|1186
7XNY|1|L1|G|1187
7XNY|1|L1|C|1188
7XNY|1|L1|G|1189

Current chains

Chain L1

28S rRNA

Nearby chains

Chain L2

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

Ribosomal protein L10 isoform A