HL_7XNY_125

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCCUUCGCGGGG

Length

12 nucleotides

Bulged bases

7XNY|1|S2|U|197, 7XNY|1|S2|G|200

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|S2|C|194
7XNY|1|S2|C|195
7XNY|1|S2|C|196
7XNY|1|S2|U|197
7XNY|1|S2|U|198
7XNY|1|S2|C|199
7XNY|1|S2|G|200
7XNY|1|S2|C|201
7XNY|1|S2|G|202
7XNY|1|S2|G|203
7XNY|1|S2|G|204
7XNY|1|S2|G|205

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8