HL_7Y41_006

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

7Y41|1|A|A|195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Y41_006 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.1212

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7Y41|1|A|G|193
7Y41|1|A|A|194
7Y41|1|A|A|195
7Y41|1|A|A|196
7Y41|1|A|C|197
7Y41|1|A|A|198
7Y41|1|A|U|199
7Y41|1|A|C|200

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain Y

50S ribosomal protein L28