HL_7Y41_013

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

7Y41|1|A|G|411, 7Y41|1|A|A|412, 7Y41|1|A|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Y41_013 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.123

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7Y41|1|A|G|409
7Y41|1|A|U|410
7Y41|1|A|G|411
7Y41|1|A|A|412
7Y41|1|A|G|413
7Y41|1|A|A|414
7Y41|1|A|G|415
7Y41|1|A|C|416
7Y41|1|A|C|417

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24