HL_7Y41_025

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGUUGAAGAC

Length

10 nucleotides

Bulged bases

7Y41|1|A|U|862, 7Y41|1|A|G|866, 7Y41|1|A|A|867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Y41_025 not in the Motif Atlas

Homologous match to HL_7A0S_022

Geometric discrepancy: 0.1448

The information below is about HL_7A0S_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

7Y41|1|A|G|859
7Y41|1|A|G|860
7Y41|1|A|U|861
7Y41|1|A|U|862
7Y41|1|A|G|863
7Y41|1|A|A|864
7Y41|1|A|A|865
7Y41|1|A|G|866
7Y41|1|A|A|867
7Y41|1|A|C|868

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32

Chain d

50S ribosomal protein L34