HL_7Y41_031

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

7Y41|1|A|A|1185, 7Y41|1|A|A|1188

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Y41_031 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.3221

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7Y41|1|A|C|1182
7Y41|1|A|U|1183
7Y41|1|A|U|1184
7Y41|1|A|A|1185
7Y41|1|A|G|1186
7Y41|1|A|A|1187
7Y41|1|A|A|1188
7Y41|1|A|G|1189
7Y41|1|A|C|1190
7Y41|1|A|A|1191
7Y41|1|A|G|1192

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L11

Chain N

50S ribosomal protein L16