HL_7Y41_036

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCCAGUC

Length

7 nucleotides

Bulged bases

7Y41|1|A|C|1440, 7Y41|1|A|U|1444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Y41_036 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.1633

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

7Y41|1|A|G|1439
7Y41|1|A|C|1440
7Y41|1|A|C|1441
7Y41|1|A|A|1442
7Y41|1|A|G|1443
7Y41|1|A|U|1444
7Y41|1|A|C|1445

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain T

50S ribosomal protein L22