HL_7Y41_065

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGGAGCAG

Length

8 nucleotides

Bulged bases

7Y41|1|A|G|2753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Y41_065 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1137

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

7Y41|1|A|U|2752
7Y41|1|A|G|2753
7Y41|1|A|G|2754
7Y41|1|A|A|2755
7Y41|1|A|G|2756
7Y41|1|A|C|2757
7Y41|1|A|A|2758
7Y41|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain f

50S ribosomal protein L36