HL_7Y41_070

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7Y41|1|A|G|2975, 7Y41|1|A|C|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Y41_070 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1125

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7Y41|1|A|C|2969
7Y41|1|A|U|2970
7Y41|1|A|G|2971
7Y41|1|A|A|2972
7Y41|1|A|A|2973
7Y41|1|A|A|2974
7Y41|1|A|G|2975
7Y41|1|A|C|2976
7Y41|1|A|A|2977
7Y41|1|A|U|2978
7Y41|1|A|C|2979
7Y41|1|A|U|2980
7Y41|1|A|A|2981
7Y41|1|A|A|2982
7Y41|1|A|G|2983

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain f

50S ribosomal protein L36