HL_7Y7E_048

3D structure

PDB id

7Y7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

7Y7E|1|a|G|329, 7Y7E|1|a|A|330, 7Y7E|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Y7E_048 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0683

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7Y7E|1|a|G|327
7Y7E|1|a|U|328
7Y7E|1|a|G|329
7Y7E|1|a|A|330
7Y7E|1|a|C|331
7Y7E|1|a|A|332
7Y7E|1|a|G|333
7Y7E|1|a|C|334
7Y7E|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24