HL_7Y7F_108

3D structure

PDB id

7Y7F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

7Y7F|1|a|U|958, 7Y7F|1|a|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Y7F_108 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.2136

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7Y7F|1|a|PSU|955
7Y7F|1|a|G|956
7Y7F|1|a|C|957
7Y7F|1|a|U|958
7Y7F|1|a|A|959
7Y7F|1|a|A|960
7Y7F|1|a|C|961
7Y7F|1|a|G|962

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain l

50S ribosomal protein L16