HL_7YLA_036

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

7YLA|1|I|A|1453, 7YLA|1|I|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7YLA_036 not in the Motif Atlas

Geometric match to HL_5J7L_169

Geometric discrepancy: 0.1018

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7YLA|1|I|C|1451
7YLA|1|I|G|1452
7YLA|1|I|A|1453
7YLA|1|I|C|1454
7YLA|1|I|G|1455
7YLA|1|I|G|1456
7YLA|1|I|U|1457
7YLA|1|I|U|1458
7YLA|1|I|G|1459

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain V

50S ribosomal protein L17