HL_7YLA_054

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

7YLA|1|I|A|2268, 7YLA|1|I|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7YLA_054 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0714

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7YLA|1|I|C|2264
7YLA|1|I|U|2265
7YLA|1|I|A|2266
7YLA|1|I|A|2267
7YLA|1|I|A|2268
7YLA|1|I|G|2269
7YLA|1|I|A|2270
7YLA|1|I|G|2271
7YLA|1|I|U|2272
7YLA|1|I|A|2273
7YLA|1|I|A|2274
7YLA|1|I|C|2275
7YLA|1|I|G|2276

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain U

50S ribosomal protein L16

Chain e

50S ribosomal protein L27