HL_7YR7_001
3D structure
- PDB id
- 7YR7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Pseudomonas aeruginosa RsmZ RNA in complex with three RsmA protein dimers
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UACAGGGAACA
- Length
- 11 nucleotides
- Bulged bases
- 7YR7|1|A|G|10, 7YR7|1|A|A|12, 7YR7|1|A|C|13
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7YR7_001 not in the Motif Atlas
- Geometric match to HL_5TBW_022
- Geometric discrepancy: 0.1083
- The information below is about HL_5TBW_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7YR7|1|A|U|4
7YR7|1|A|A|5
7YR7|1|A|C|6
7YR7|1|A|A|7
7YR7|1|A|G|8
7YR7|1|A|G|9
7YR7|1|A|G|10
7YR7|1|A|A|11
7YR7|1|A|A|12
7YR7|1|A|C|13
7YR7|1|A|A|14
Current chains
- Chain A
- RsmZ RNA (118-MER)
Nearby chains
- Chain B
- Translational regulator CsrA
- Chain D
- Translational regulator CsrA
- Chain E
- Translational regulator CsrA
- Chain G
- Translational regulator CsrA
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