HL_7YR7_002

3D structure

PDB id

7YR7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Pseudomonas aeruginosa RsmZ RNA in complex with three RsmA protein dimers

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAGGAUC

Length

8 nucleotides

Bulged bases

7YR7|1|A|A|25, 7YR7|1|A|U|30

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7YR7_002 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2556

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7YR7|1|A|G|24
7YR7|1|A|A|25
7YR7|1|A|A|26
7YR7|1|A|G|27
7YR7|1|A|G|28
7YR7|1|A|A|29
7YR7|1|A|U|30
7YR7|1|A|C|31

Current chains

Chain A

RsmZ RNA (118-MER)

Nearby chains

Chain C

Translational regulator CsrA

Chain F

Translational regulator CsrA