HL_7Z20_005

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

7Z20|1|b|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z20_005 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.1399

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

7Z20|1|b|G|123
7Z20|1|b|G|124
7Z20|1|b|A|125
7Z20|1|b|A|126
7Z20|1|b|A|127
7Z20|1|b|C|128

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain t

50S ribosomal protein L23