7Z20 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7Z20_075 | 1/a/34:48 | No text annotation | homologous HL_5J7L_215 HL_97756.2 | |
| HL_7Z20_001 | 1/a/38:44 | No text annotation | geometric HL_5J7L_203 HL_47787.2 | |
| HL_7Z20_002 | 1/a/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
| HL_7Z20_003 | 1/b/59:68 | Pseudoknot geometry | geometric HL_4GXY_003 HL_65794.5 | |
| HL_7Z20_004 | 1/b/87:95 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_7Z20_005 | 1/b/123:128 | No text annotation | geometric HL_4V9F_011 HL_75660.5 | |
| HL_7Z20_006 | 1/b/137:142 | UNCG | geometric HL_6QN3_001 HL_34617.5 | |
| HL_7Z20_007 | 1/b/158:168 | No text annotation | geometric HL_5J7L_138 HL_68257.1 | |
| HL_7Z20_008 | 1/b/194:201 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
| HL_7Z20_009 | 1/b/225:230 | No text annotation | geometric HL_5J7L_140 HL_62934.1 | |
| HL_7Z20_010 | 1/b/246:252 | No text annotation | geometric HL_5J7L_141 HL_37369.2 | |
| HL_7Z20_011 | 1/b/305:312 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_142 HL_01609.3 | |
| HL_7Z20_012 | 1/b/319:323 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_7Z20_013 | 1/b/327:335 | T-loop with unstacked turn | geometric HL_5J7L_144 HL_27670.2 | |
| HL_7Z20_014 | 1/b/382:392 | No text annotation | geometric HL_5J7L_145 HL_91503.7 | |
| HL_7Z20_015 | 1/b/410:417 | Pseudoknot geometry | geometric HL_5J7L_146 HL_30680.3 | |
| HL_7Z20_016 | 1/b/462:467 | GNRA | geometric HL_7RQB_015 NA | |
| HL_7Z20_017 | 1/b/487:493 | GNRA | geometric HL_5J7L_148 HL_37824.8 | |
| HL_7Z20_019 | 1/b/565:574 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 HL_28252.9 | |
| HL_7Z20_020 | 1/b/610:616 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_7Z20_021 | 1/b/628:633 | GNRA | geometric HL_5J7L_152 HL_37824.8 | |
| HL_7Z20_022 | 1/b/640:646 | GNRA | geometric HL_4WF9_021 HL_37824.8 | |
| HL_7Z20_023 | 1/b/711:718 | GNRA wlth tandem sheared | geometric HL_5J7L_154 HL_81538.2 | |
| HL_7Z20_024 | 1/b/743:752 | No text annotation | geometric HL_7A0S_022 HL_88205.2 | |
| HL_7Z20_025 | 1/b/778:784 | UNCG variation | geometric HL_2NUE_001 HL_53890.2 | |
| HL_7Z20_026 | 1/b/825:830 | No text annotation | geometric HL_7RQB_025 NA | |
| HL_7Z20_027 | 1/b/882:892 | No text annotation | ||
| HL_7Z20_028 | 1/b/954:961 | GNRA | geometric HL_4WF9_027 HL_37824.8 | |
| HL_7Z20_029 | 1/b/977:984 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_7Z20_030 | 1/b/1062:1074 | No text annotation | ||
| HL_7Z20_031 | 1/b/1091:1098 | No text annotation | ||
| HL_7Z20_032 | 1/b/1169:1178 | No text annotation | ||
| HL_7Z20_033 | 1/b/1221:1226 | GNRA | geometric HL_5J7L_164 HL_37824.8 | |
| HL_7Z20_034 | 1/b/1280:1288 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_165 HL_28252.9 | |
| HL_7Z20_035 | 1/b/1323:1329 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_166 HL_57176.2 | |
| HL_7Z20_036 | 1/b/1362:1367 | GNRA | geometric HL_5J7L_167 HL_37824.8 | |
| HL_7Z20_037 | 1/b/1388:1397 | No text annotation | geometric HL_5J7L_168 HL_81545.2 | |
| HL_7Z20_038 | 1/b/1450:1458 | Mini UNCG | geometric HL_4L8H_001 HL_48778.2 | |
| HL_7Z20_039 | 1/b/1491:1497 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_170 HL_57176.2 | |
| HL_7Z20_040 | 1/b/1532:1537 | UNCG | geometric HL_3U4M_001 HL_34617.5 | |
| HL_7Z20_041 | 1/b/1564:1567 | Mini UNCG | geometric HL_5J7L_172 HL_48778.2 | |
| HL_7Z20_042 | 1/b/1611:1618 | No text annotation | geometric HL_7RQB_040 NA | |
| HL_7Z20_043 | 1/b/1629:1635 | GNRA | geometric HL_5J7L_174 HL_37824.8 | |
| HL_7Z20_044 | 1/b/1690:1695 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_7Z20_045 | 1/b/1727:1730 | Mini UNCG | geometric HL_5B2T_002 HL_48778.2 | |
| HL_7Z20_046 | 1/b/1751:1755 | No text annotation | geometric HL_5J7L_177 HL_80709.3 | |
| HL_7Z20_047 | 1/b/1776:1786 | No text annotation | geometric HL_5J7L_178 HL_01962.2 | |
| HL_7Z20_048 | 1/b/1805:1810 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
| HL_7Z20_049 | 1/b/1867:1872 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_7Z20_050 | 1/b/1909:1919 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_7Z20_051 | 1/b/1948:1956 | No text annotation | geometric HL_5J7L_182 HL_20167.2 | |
| HL_7Z20_052 | 1/b/2026:2035 | No text annotation | geometric HL_4WF9_047 HL_61996.3 | |
| HL_7Z20_053 | 1/b/2120:2176 | No text annotation | ||
| HL_7Z20_054 | 1/b/2208:2214 | No text annotation | geometric HL_5J7L_185 HL_49922.4 | |
| HL_7Z20_055 | 1/b/2247:2255 | No text annotation | geometric HL_4WF9_049 HL_85367.2 | |
| HL_7Z20_056 | 1/b/2263:2275 | No text annotation | geometric HL_5J7L_187 HL_91939.2 | |
| HL_7Z20_076 | 1/b/2303:2311 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
| HL_7Z20_058 | 1/b/2323:2330 | Pseudoknot geometry | geometric HL_5J7L_189 HL_93324.4 | |
| HL_7Z20_059 | 1/b/2355:2360 | GNRA | geometric HL_5J7L_190 HL_37824.8 | |
| HL_7Z20_060 | 1/b/2373:2378 | GNRA | geometric HL_7A0S_020 HL_37824.8 | |
| HL_7Z20_061 | 1/b/2403:2412 | No text annotation | geometric HL_5J7L_192 HL_53454.2 | |
| HL_7Z20_062 | 1/b/2470:2478 | No text annotation | geometric HL_4V9F_062 HL_32735.2 | |
| HL_7Z20_063 | 1/b/2527:2534 | GNRA variation | geometric HL_5J7L_194 HL_31585.4 | |
| HL_7Z20_064 | 1/b/2550:2556 | No text annotation | geometric HL_4WF9_058 HL_30068.2 | |
| HL_7Z20_065 | 1/b/2593:2598 | GNRA | geometric HL_4V9F_065 HL_37824.8 | |
| HL_7Z20_066 | 1/b/2657:2662 | GNRA | geometric HL_4V9F_066 HL_37824.8 | |
| HL_7Z20_067 | 1/b/2700:2705 | Ribsomal LSU H95 | geometric HL_5J7L_198 HL_65794.5 | |
| HL_7Z20_068 | 1/b/2744:2758 | No text annotation | geometric HL_5J7L_199 HL_74055.2 | |
| HL_7Z20_069 | 1/b/2794:2800 | UNCG variation | homologous HL_5J7L_200 HL_08100.1 | |
| HL_7Z20_070 | 1/b/2818:2826 | No text annotation | geometric HL_5J7L_201 HL_64690.6 | |
| HL_7Z20_071 | 1/b/2855:2860 | GNRA | geometric HL_5J7L_202 HL_37824.8 | |
| HL_7Z20_072 | 1/v/13:22 | tRNA D-loop | geometric HL_5B63_003 HL_20811.4 | |
| HL_7Z20_073 | 1/v/30:40 | No text annotation | homologous HL_4V7M_033 NA | |
| HL_7Z20_074 | 1/v/53:61 | T-loop with 2 stacked bulged bases | geometric HL_4YCO_003 HL_28252.9 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7Z20_018 | No text annotation | ||
| HL_7Z20_057 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7Z20_001 | 1/a/17:18, 1/a/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.7 | |
| IL_7Z20_002 | 1/a/23:28, 1/a/56:60 | No text annotation | homologous IL_7A0S_103 IL_18472.4 | |
| IL_7Z20_003 | 1/a/30:31, 1/a/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 IL_68140.4 | |
| IL_7Z20_004 | 1/a/34:38, 1/a/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 IL_58103.11 | |
| IL_7Z20_005 | 1/a/71:79, 1/a/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 | |
| IL_7Z20_006 | 1/b/24:30, 1/b/510:516 | Triple sheared with non-canonical cWW | geometric IL_5J7L_245 IL_04021.2 | |
| IL_7Z20_007 | 1/b/36:37, 1/b/442:444 | Single bulged A | geometric IL_7RQB_002 NA | |
| IL_7Z20_008 | 1/b/43:44, 1/b/434:436 | Minor groove platform | geometric IL_5J7L_247 IL_51454.3 | |
| IL_7Z20_009 | 1/b/81:85, 1/b/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_7Z20_010 | 1/b/183:184, 1/b/212:214 | Single stack bend | geometric IL_4WF9_007 IL_90729.1 | |
| IL_7Z20_011 | 1/b/188:194, 1/b/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 IL_04346.10 | |
| IL_7Z20_012 | 1/b/239:245, 1/b/253:258 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5J7L_251 IL_26307.2 | |
| IL_7Z20_013 | 1/b/269:271, 1/b/366:370 | No text annotation | geometric IL_5J7L_252 IL_47972.1 | |
| IL_7Z20_014 | 1/b/274:281, 1/b/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_7Z20_015 | 1/b/293:295, 1/b/343:347 | No text annotation | geometric IL_4WF9_014 IL_69440.3 | |
| IL_7Z20_016 | 1/b/481:484, 1/b/496:509 | No text annotation | geometric IL_5J7L_255 IL_81516.2 | |
| IL_7Z20_017 | 1/b/536:539, 1/b/553:556 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_7Z20_018 | 1/b/563:565, 1/b/574:576 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 IL_07785.1 | |
| IL_7Z20_019 | 1/b/605:609, 1/b/617:621 | AAA cross-strand stack | geometric IL_5J7L_258 IL_66798.2 | |
| IL_7Z20_020 | 1/b/671:673, 1/b/805:807 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_7Z20_021 | 1/b/673:677, 1/b/798:805 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_7Z20_022 | 1/b/696:697, 1/b/762:764 | Single bulged A | geometric IL_5J7L_261 IL_31462.7 | |
| IL_7Z20_023 | 1/b/701:702, 1/b/727:729 | Single bulged G | geometric IL_5J7L_262 IL_00225.14 | |
| IL_7Z20_024 | 1/b/702:706, 1/b/723:727 | Triple sheared | geometric IL_5J7L_263 IL_50730.2 | |
| IL_7Z20_025 | 1/b/737:739, 1/b/756:757 | Major groove platform | geometric IL_4WF9_026 IL_48076.6 | |
| IL_7Z20_026 | 1/b/774:776, 1/b/786:790 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
| IL_7Z20_027 | 1/b/843:847, 1/b/929:933 | No text annotation | homologous IL_5J7L_399 IL_96236.1 | |
| IL_7Z20_028 | 1/b/849:850, 1/b/925:927 | Single stack bend | geometric IL_5J7L_269 IL_26793.1 | |
| IL_7Z20_029 | 1/b/855:861, 1/b/914:920 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 IL_29198.2 | |
| IL_7Z20_030 | 1/b/861:862, 1/b/912:914 | Single bulged G | geometric IL_5J7L_271 IL_00225.14 | |
| IL_7Z20_031 | 1/b/863:867, 1/b/908:911 | C-loop with bulged stacked A's | geometric IL_5J7L_272 IL_26222.2 | |
| IL_7Z20_032 | 1/b/869:871, 1/b/904:906 | Isolated non-canonical cWW pair | geometric IL_5J7L_273 IL_28037.2 | |
| IL_7Z20_033 | 1/b/874:878, 1/b/897:901 | No text annotation | geometric IL_4V88_390 NA | |
| IL_7Z20_034 | 1/b/879:880, 1/b/894:896 | No text annotation | homologous IL_5J7L_275 NA | |
| IL_7Z20_035 | 1/b/993:995, 1/b/1158:1159 | Single bulged C | geometric IL_5J7L_276 IL_61258.15 | |
| IL_7Z20_036 | 1/b/997:1001, 1/b/1152:1156 | UAA/GAN | geometric IL_5J7L_277 IL_38507.2 | |
| IL_7Z20_037 | 1/b/1003:1010, 1/b/1149:1150 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_7Z20_038 | 1/b/1010:1012, 1/b/1148:1149 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
| IL_7Z20_039 | 1/b/1017:1023, 1/b/1139:1143 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_7Z20_040 | 1/b/1023:1029, 1/b/1123:1139 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_7Z20_041 | 1/b/1030:1033, 1/b/1120:1122 | Isolated non-canonical cWW pair | geometric IL_5J7L_282 IL_57744.1 | |
| IL_7Z20_042 | 1/b/1035:1042, 1/b/1111:1118 | No text annotation | ||
| IL_7Z20_043 | 1/b/1042:1050, 1/b/1107:1111 | Kink-turn | geometric IL_5J7L_284 IL_99692.2 | |
| IL_7Z20_044 | 1/b/1058:1062, 1/b/1074:1078 | No text annotation | ||
| IL_7Z20_045 | 1/b/1195:1197, 1/b/1246:1249 | Isolated cWS basepair | geometric IL_4WF9_044 IL_42997.3 | |
| IL_7Z20_046 | 1/b/1201:1205, 1/b/1239:1242 | No text annotation | geometric IL_5J7L_287 IL_91920.1 | |
| IL_7Z20_047 | 1/b/1207:1214, 1/b/1233:1237 | Kink-turn | geometric IL_5J7L_288 IL_70923.9 | |
| IL_7Z20_048 | 1/b/1261:1268, 1/b/2010:2016 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_289 IL_04346.10 | |
| IL_7Z20_049 | 1/b/1309:1312, 1/b/1602:1603 | Major groove platform; stack outside cWW | geometric IL_7RQB_050 NA | |
| IL_7Z20_050 | 1/b/1318:1322, 1/b/1330:1332 | C-loop | geometric IL_5J7L_291 IL_63596.11 | |
| IL_7Z20_051 | 1/b/1350:1354, 1/b/1375:1379 | UAA/GAN | geometric IL_5J7L_292 IL_89021.2 | |
| IL_7Z20_052 | 1/b/1356:1360, 1/b/1369:1373 | tSH-tHW-tHS | geometric IL_5J7L_293 IL_17136.7 | |
| IL_7Z20_053 | 1/b/1414:1415, 1/b/1581:1586 | No text annotation | geometric IL_5J7L_294 IL_87211.1 | |
| IL_7Z20_054 | 1/b/1416:1420, 1/b/1576:1580 | UAA/GAN | geometric IL_5J7L_295 IL_38507.2 | |
| IL_7Z20_055 | 1/b/1431:1434, 1/b/1556:1560 | Tandem non-canonical cWW pairs | geometric IL_5J7L_296 IL_58112.2 | |
| IL_7Z20_056 | 1/b/1436:1439, 1/b/1550:1554 | tSH-tHW | geometric IL_5J7L_297 IL_99646.2 | |
| IL_7Z20_057 | 1/b/1449:1450, 1/b/1458:1460 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
| IL_7Z20_058 | 1/b/1467:1470, 1/b/1519:1523 | No text annotation | geometric IL_5J7L_299 IL_68574.4 | |
| IL_7Z20_059 | 1/b/1473:1477, 1/b/1512:1516 | tSH-tHW-tHS | geometric IL_5J7L_300 IL_38862.4 | |
| IL_7Z20_060 | 1/b/1480:1481, 1/b/1506:1509 | No text annotation | ||
| IL_7Z20_061 | 1/b/1488:1490, 1/b/1498:1499 | Single bulged A | geometric IL_5J7L_302 IL_31462.7 | |
| IL_7Z20_062 | 1/b/1525:1528, 1/b/1541:1545 | UAA/GAN variation | geometric IL_5J7L_303 IL_23774.1 | |
| IL_7Z20_063 | 1/b/1650:1655, 1/b/2003:2005 | No text annotation | geometric IL_5J7L_304 IL_12566.4 | |
| IL_7Z20_064 | 1/b/1662:1664, 1/b/1994:1996 | Isolated tWW turn | geometric IL_4WF9_063 IL_67095.2 | |
| IL_7Z20_065 | 1/b/1665:1668, 1/b/1992:1993 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 IL_50694.7 | |
| IL_7Z20_113 | 1/b/1665:1673, 1/b/1989:1993 | No text annotation | homologous IL_5J7L_386 IL_22854.4 | |
| IL_7Z20_066 | 1/b/1668:1673, 1/b/1989:1992 | Intercalated tWH | geometric IL_5J7L_307 IL_76758.2 | |
| IL_7Z20_067 | 1/b/1685:1690, 1/b/1695:1701 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 IL_47346.2 | |
| IL_7Z20_068 | 1/b/1711:1717, 1/b/1741:1745 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_5J7L_309 IL_88269.4 | |
| IL_7Z20_069 | 1/b/1719:1723, 1/b/1735:1739 | Triple sheared | geometric IL_5J7L_310 IL_50730.2 | |
| IL_7Z20_071 | 1/b/1726:1727, 1/b/1730:1732 | Single bulged C | geometric IL_3SNP_003 IL_61258.15 | |
| IL_7Z20_072 | 1/b/1769:1770, 1/b/1979:1981 | Single bulged A | geometric IL_5J7L_312 IL_31462.7 | |
| IL_7Z20_073 | 1/b/1797:1803, 1/b/1812:1820 | Kink-turn related | geometric IL_5J7L_313 IL_17069.5 | |
| IL_7Z20_074 | 1/b/1836:1839, 1/b/1901:1902 | Minor groove platform, major groove intercalation | geometric IL_5J7L_314 IL_95583.2 | |
| IL_7Z20_075 | 1/b/1840:1841, 1/b/1897:1900 | Major groove intercalation | geometric IL_4V9F_067 IL_82107.5 | |
| IL_7Z20_076 | 1/b/1845:1848, 1/b/1892:1893 | Major groove minor groove platform; mini C-loop | geometric IL_1I6U_002 IL_68140.4 | |
| IL_7Z20_114 | 1/b/1850:1859, 1/b/1881:1890 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_7Z20_077 | 1/b/1863:1866, 1/b/1873:1877 | UAA/GAN related | geometric IL_5J7L_317 IL_77691.5 | |
| IL_7Z20_078 | 1/b/1932:1933, 1/b/1963:1966 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_7Z20_079 | 1/b/1933:1944, 1/b/1960:1963 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_7Z20_080 | 1/b/2049:2051, 1/b/2616:2617 | Major groove platform | geometric IL_5J7L_320 IL_48076.6 | |
| IL_7Z20_081 | 1/b/2053:2055, 1/b/2611:2614 | No text annotation | geometric IL_5J7L_321 IL_83389.2 | |
| IL_7Z20_082 | 1/b/2066:2068, 1/b/2441:2442 | Single bulged U | geometric IL_7A0S_075 IL_89505.4 | |
| IL_7Z20_083 | 1/b/2069:2070, 1/b/2437:2440 | Minor groove platform | geometric IL_5TBW_094 NA | |
| IL_7Z20_084 | 1/b/2080:2082, 1/b/2235:2238 | Isolated tHS basepair with bulges | geometric IL_5J7L_325 IL_85599.2 | |
| IL_7Z20_085 | 1/b/2084:2086, 1/b/2231:2233 | Isolated non-canonical cWW pair | geometric IL_5J7L_326 IL_28037.2 | |
| IL_7Z20_086 | 1/b/2102:2120, 1/b/2176:2185 | No text annotation | ||
| IL_7Z20_087 | 1/b/2201:2203, 1/b/2219:2220 | Single bulged U | geometric IL_5J7L_331 IL_89505.4 | |
| IL_7Z20_088 | 1/b/2296:2298, 1/b/2316:2320 | No text annotation | geometric IL_5J7L_332 IL_61476.2 | |
| IL_7Z20_089 | 1/b/2349:2352, 1/b/2363:2366 | Double sheared | geometric IL_5J7L_333 IL_09705.15 | |
| IL_7Z20_090 | 1/b/2400:2402, 1/b/2413:2414 | Major groove intercalation | geometric IL_3MXH_003 IL_89505.4 | |
| IL_7Z20_091 | 1/b/2452:2453, 1/b/2497:2499 | Single stack bend | geometric IL_4WF9_089 IL_26793.1 | |
| IL_7Z20_092 | 1/b/2453:2454, 1/b/2495:2497 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_7Z20_093 | 1/b/2456:2458, 1/b/2492:2493 | Major groove platform | geometric IL_4WF9_091 IL_48076.6 | |
| IL_7Z20_094 | 1/b/2458:2460, 1/b/2488:2492 | Major groove minor groove platform with extra cWW | geometric IL_7A0S_086 IL_51387.3 | |
| IL_7Z20_095 | 1/b/2465:2469, 1/b/2479:2483 | Double sheared with non-canonical cWW | geometric IL_5J7L_338 IL_17948.2 | |
| IL_7Z20_096 | 1/b/2506:2507, 1/b/2579:2581 | Major groove platform | geometric IL_7RQB_096 NA | |
| IL_7Z20_097 | 1/b/2509:2511, 1/b/2573:2577 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 IL_07785.1 | |
| IL_7Z20_098 | 1/b/2511:2512, 1/b/2570:2573 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_7Z20_099 | 1/b/2521:2522, 1/b/2539:2542 | Major groove platform with intercalation | geometric IL_5J7L_342 IL_02555.1 | |
| IL_7Z20_100 | 1/b/2590:2591, 1/b/2600:2602 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_7Z20_101 | 1/b/2635:2639, 1/b/2773:2781 | tSH-tHS-tHW | geometric IL_5J7L_345 IL_04638.3 | |
| IL_7Z20_102 | 1/b/2651:2657, 1/b/2662:2667 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 IL_16458.4 | |
| IL_7Z20_103 | 1/b/2679:2683, 1/b/2724:2726 | C-loop | geometric IL_5J7L_347 IL_63596.11 | |
| IL_7Z20_104 | 1/b/2686:2690, 1/b/2717:2721 | UAA/GAN related, with intercalation | geometric IL_5J7L_348 IL_23774.1 | |
| IL_7Z20_105 | 1/b/2694:2695, 1/b/2710:2713 | Multiple bulged bases | geometric IL_5J7L_349 IL_42626.2 | |
| IL_7Z20_106 | 1/b/2736:2741, 1/b/2761:2766 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
| IL_7Z20_107 | 1/b/2805:2810, 1/b/2888:2891 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
| IL_7Z20_108 | 1/b/2837:2838, 1/b/2877:2879 | Major groove intercalation | geometric IL_5J7L_352 IL_66635.5 | |
| IL_7Z20_109 | 1/b/2842:2845, 1/b/2869:2873 | Multiple bulged bases with non-canonical cWW | geometric IL_5J7L_353 IL_64231.5 | |
| IL_7Z20_110 | 1/b/2846:2851, 1/b/2864:2868 | tHS double platform | geometric IL_5J7L_354 IL_70411.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7Z20_112 | No text annotation | ||
| IL_7Z20_070 | Isolated non-canonical cWW pair | ||
| IL_7Z20_111 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7Z20_001 | 1/a/10:16, 1/a/68:70, 1/a/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J3_7Z20_002 | 1/b/30:31, 1/b/474:481, 1/b/509:510 | No text annotation | geometric J3_5J7L_036 J3_60031.2 | |
| J3_7Z20_012 | 1/b/30:31, 1/b/474:484, 1/b/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_7Z20_013 | 1/b/32:35, 1/b/445:461, 1/b/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_7Z20_003 | 1/b/56:57, 1/b/70:76, 1/b/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_7Z20_014 | 1/b/297:301, 1/b/316:325, 1/b/337:341 | No text annotation | homologous J3_5J7L_068 J3_46299.2 | |
| J3_7Z20_004 | 1/b/682:688, 1/b/772:774, 1/b/790:793 | No text annotation | homologous J3_8VTW_001 NA | |
| J3_7Z20_005 | 1/b/697:699, 1/b/731:735, 1/b/759:762 | No text annotation | homologous J3_8VTW_002 NA | |
| J3_7Z20_015 | 1/b/1051:1058, 1/b/1078:1089, 1/b/1100:1106 | No text annotation | ||
| J3_7Z20_006 | 1/b/1297:1302, 1/b/1624:1626, 1/b/1638:1641 | No text annotation | homologous J3_8VTW_004 NA | |
| J3_7Z20_007 | 1/b/1305:1308, 1/b/1604:1610, 1/b/1619:1621 | No text annotation | homologous J3_8VTW_005 NA | |
| J3_7Z20_016 | 1/b/1343:1349, 1/b/1380:1384, 1/b/1401:1402 | No text annotation | homologous J3_7A0S_018 J3_31965.2 | |
| J3_7Z20_017 | 1/b/1423:1428, 1/b/1563:1564, 1/b/1567:1573 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_7Z20_008 | 1/b/2090:2092, 1/b/2195:2199, 1/b/2222:2227 | No text annotation | homologous J3_8VTW_006 NA | |
| J3_7Z20_018 | 1/b/2281:2283, 1/b/2383:2394, 1/b/2420:2426 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_7Z20_009 | 1/b/2294:2296, 1/b/2320:2322, 1/b/2331:2336 | No text annotation | homologous J3_8VTW_007 NA | |
| J3_7Z20_019 | 1/b/2294:2298, 1/b/2316:2322, 1/b/2331:2336 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_7Z20_020 | 1/b/2516:2519, 1/b/2544:2549, 1/b/2557:2566 | No text annotation | ||
| J3_7Z20_010 | 1/b/2788:2790, 1/b/2804:2805, 1/b/2891:2893 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_7Z20_011 | 1/b/2811:2814, 1/b/2830:2835, 1/b/2881:2887 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J4_7Z20_001 | 1/b/268:269, 1/b/370:375, 1/b/399:406, 1/b/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_7Z20_002 | 1/b/297:301, 1/b/316:319, 1/b/323:325, 1/b/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_7Z20_003 | 1/b/600:603, 1/b/623:627, 1/b/634:637, 1/b/649:655 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_7Z20_004 | 1/b/1269:1275, 1/b/1293:1294, 1/b/1644:1647, 1/b/2008:2009 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_7Z20_005 | 1/b/1309:1313, 1/b/1337:1342, 1/b/1403:1404, 1/b/1596:1603 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_7Z20_006 | 1/b/1312:1313, 1/b/1337:1342, 1/b/1403:1404, 1/b/1596:1602 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_7Z20_007 | 1/b/1443:1444, 1/b/1465:1466, 1/b/1524:1525, 1/b/1545:1546 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_7Z20_008 | 1/b/1771:1775, 1/b/1787:1791, 1/b/1826:1829, 1/b/1974:1978 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_7Z20_009 | 1/b/1832:1834, 1/b/1904:1905, 1/b/1923:1932, 1/b/1966:1971 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_7Z20_010 | 1/b/2284:2288, 1/b/2342:2346, 1/b/2369:2371, 1/b/2380:2382 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
| J4_7Z20_011 | 1/b/2642:2645, 1/b/2673:2675, 1/b/2730:2734, 1/b/2768:2770 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J4_7Z20_012 | 1/v/7:11, 1/v/24:27, 1/v/43:49, 1/v/65:66 | No text annotation | ||
| J5_7Z20_001 | 1/b/47:54, 1/b/116:121, 1/b/130:131, 1/b/148:150, 1/b/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_7Z20_002 | 1/b/531:533, 1/b/559:563, 1/b/576:578, 1/b/1260:1261, 1/b/2016:2017 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_7Z20_003 | 1/b/583:588, 1/b/667:670, 1/b/808:811, 1/b/1194:1195, 1/b/1249:1255 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_7Z20_004 | 1/b/1673:1681, 1/b/1705:1706, 1/b/1750:1751, 1/b/1755:1763, 1/b/1987:1989 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_7Z20_005 | 1/b/2056:2063, 1/b/2445:2452, 1/b/2499:2505, 1/b/2582:2587, 1/b/2605:2610 | No text annotation | ||
| J5_7Z20_006 | 1/b/2073:2076, 1/b/2242:2245, 1/b/2257:2258, 1/b/2280:2281, 1/b/2426:2434 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J6_7Z20_001 | 1/b/45:46, 1/b/179:183, 1/b/214:224, 1/b/231:235, 1/b/262:266, 1/b/426:433 | No text annotation | ||
| J6_7Z20_002 | 1/b/2073:2076, 1/b/2242:2245, 1/b/2257:2258, 1/b/2280:2283, 1/b/2383:2394, 1/b/2420:2434 | No text annotation | ||
| J7_7Z20_001 | 1/b/8:15, 1/b/525:531, 1/b/2017:2022, 1/b/2039:2042, 1/b/2624:2629, 1/b/2787:2788, 1/b/2893:2894 | No text annotation | ||
| J7_7Z20_002 | 1/b/816:821, 1/b/834:837, 1/b/939:945, 1/b/970:975, 1/b/986:990, 1/b/1162:1163, 1/b/1184:1189 | No text annotation |
Problematic loops
No problematic loops
Coloring options: