HL_7Z20_011

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7Z20|1|b|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z20_011 not in the Motif Atlas

Geometric match to HL_5J7L_142

Geometric discrepancy: 0.0868

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

7Z20|1|b|C|305
7Z20|1|b|U|306
7Z20|1|b|G|307
7Z20|1|b|G|308
7Z20|1|b|A|309
7Z20|1|b|A|310
7Z20|1|b|A|311
7Z20|1|b|G|312

Current chains

Chain b

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L24