HL_7Z20_038

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

7Z20|1|b|A|1452, 7Z20|1|b|C|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z20_038 not in the Motif Atlas

Geometric match to HL_4L8H_001

Geometric discrepancy: 0.1545

The information below is about HL_4L8H_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7Z20|1|b|C|1450
7Z20|1|b|G|1451
7Z20|1|b|A|1452
7Z20|1|b|C|1453
7Z20|1|b|G|1454
7Z20|1|b|G|1455
7Z20|1|b|U|1456
7Z20|1|b|U|1457
7Z20|1|b|G|1458

Current chains

Chain b

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L17