HL_7Z20_039

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

7Z20|1|b|C|1492, 7Z20|1|b|U|1496

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z20_039 not in the Motif Atlas

Geometric match to HL_5J7L_170

Geometric discrepancy: 0.1725

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7Z20|1|b|G|1491
7Z20|1|b|C|1492
7Z20|1|b|A|1493
7Z20|1|b|A|1494
7Z20|1|b|A|1495
7Z20|1|b|U|1496
7Z20|1|b|C|1497

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2