HL_7Z20_060

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z20_060 not in the Motif Atlas

Geometric match to HL_7A0S_020

Geometric discrepancy: 0.2567

The information below is about HL_7A0S_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7Z20|1|b|C|2373
7Z20|1|b|G|2374
7Z20|1|b|A|2375
7Z20|1|b|A|2376
7Z20|1|b|A|2377
7Z20|1|b|G|2378

Current chains

Chain b

23S rRNA

Nearby chains

Chain o

50S ribosomal protein L18