HL_7Z20_070

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

7Z20|1|b|A|2819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z20_070 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.0498

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7Z20|1|b|G|2818
7Z20|1|b|A|2819
7Z20|1|b|A|2820
7Z20|1|b|G|2821
7Z20|1|b|A|2822
7Z20|1|b|C|2823
7Z20|1|b|G|2824
7Z20|1|b|A|2825
7Z20|1|b|C|2826

Current chains

Chain b

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain n

50S ribosomal protein L17