HL_7Z34_017

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z34_017 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.4393

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7Z34|1|1|U|707
7Z34|1|1|G|708
7Z34|1|1|A|709
7Z34|1|1|A|710
7Z34|1|1|A|711
7Z34|1|1|G|712

Current chains

Chain 1

35S pre-ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L28

Chain L

60S ribosomal protein L13-A

Chain i

60S ribosomal protein L36-A