7Z34 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7Z34_001 | 1/1/38:45 | No text annotation | homologous HL_8C3A_001 NA | |
| HL_7Z34_002 | 1/1/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7Z34_003 | 1/1/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_7Z34_004 | 1/1/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_7Z34_006 | 1/1/208:212 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_7Z34_007 | 1/1/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_7Z34_008 | 1/1/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_7Z34_009 | 1/1/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_7Z34_010 | 1/1/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7Z34_011 | 1/1/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_7Z34_015 | 1/1/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_7Z34_080 | 1/1/687:693 | No text annotation | geometric HL_5J7L_151 NA | |
| HL_7Z34_017 | 1/1/707:712 | GNRA | homologous HL_8C3A_016 NA | |
| HL_7Z34_021 | 1/1/876:885 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_7Z34_022 | 1/1/910:918 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_7Z34_023 | 1/1/958:963 | No text annotation | homologous HL_8P9A_134 HL_27530.1 | |
| HL_7Z34_025 | 1/1/1076:1083 | No text annotation | homologous HL_8C3A_024 NA | |
| HL_7Z34_026 | 1/1/1126:1132 | GNRA | homologous HL_8C3A_025 NA | |
| HL_7Z34_027 | 1/1/1148:1155 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_7Z34_030 | 1/1/1347:1357 | Mini UNCG | geometric HL_4WF9_037 HL_90436.3 | |
| HL_7Z34_031 | 1/1/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7Z34_032 | 1/1/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_7Z34_033 | 1/1/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_7Z34_034 | 1/1/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_7Z34_036 | 1/1/1599:1608 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_7Z34_037 | 1/1/1634:1639 | GNRA | homologous HL_8C3A_036 NA | |
| HL_7Z34_038 | 1/1/1680:1688 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_7Z34_042 | 1/1/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_7Z34_043 | 1/1/1862:1868 | GNRA | homologous HL_8C3A_042 NA | |
| HL_7Z34_044 | 1/1/1923:1928 | UNCG | geometric HL_4WF9_040 HL_61337.4 | |
| HL_7Z34_045 | 1/1/2008:2013 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 | |
| HL_7Z34_047 | 1/1/2110:2114 | No text annotation | ||
| HL_7Z34_048 | 1/1/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_7Z34_081 | 1/1/2163:2171 | No text annotation | geometric HL_7KI3_001 HL_75660.8 | |
| HL_7Z34_049 | 1/1/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_7Z34_050 | 1/1/2220:2225 | GNRA | homologous HL_8C3A_048 NA | |
| HL_7Z34_053 | 1/1/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_7Z34_054 | 1/1/2465:2490 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_7Z34_056 | 1/1/2567:2574 | No text annotation | geometric HL_5TBW_012 NA | |
| HL_7Z34_058 | 1/1/2633:2645 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_7Z34_061 | 1/1/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_7Z34_062 | 1/1/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_7Z34_063 | 1/1/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_7Z34_065 | 1/1/2896:2905 | No text annotation | geometric HL_4WF9_011 HL_75660.8 | |
| HL_7Z34_067 | 1/1/2963:2968 | GNRA | homologous HL_8C3A_065 NA | |
| HL_7Z34_068 | 1/1/3025:3030 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_7Z34_069 | 1/1/3068:3073 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7Z34_070 | 1/1/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7Z34_072 | 1/1/3240:3247 | No text annotation | homologous HL_8P9A_180 HL_31089.1 | |
| HL_7Z34_073 | 1/1/3303:3311 | No text annotation | geometric HL_5TBW_070 NA | |
| HL_7Z34_076 | 1/2/88:93 | GNRA | homologous HL_7A0S_070 HL_34789.4 | |
| HL_7Z34_083 | 1/3/47:56 | Pseudoknot with intercalation | homologous HL_8C3A_229 NA | |
| HL_7Z34_077 | 1/3/68:91 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_7Z34_078 | 1/3/108:114 | No text annotation | geometric HL_1WZ2_007 HL_75660.8 | |
| HL_7Z34_079 | 1/3/124:129 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7Z34_005 | T-loop with 2 stacked bulged bases | ||
| HL_7Z34_012 | No text annotation | ||
| HL_7Z34_013 | No text annotation | ||
| HL_7Z34_014 | GNRA variation | ||
| HL_7Z34_016 | No text annotation | ||
| HL_7Z34_018 | No text annotation | ||
| HL_7Z34_019 | No text annotation | ||
| HL_7Z34_020 | GNRA | ||
| HL_7Z34_024 | No text annotation | ||
| HL_7Z34_028 | No text annotation | ||
| HL_7Z34_029 | GNRA wlth tandem sheared | ||
| HL_7Z34_035 | No text annotation | ||
| HL_7Z34_039 | No text annotation | ||
| HL_7Z34_040 | No text annotation | ||
| HL_7Z34_041 | No text annotation | ||
| HL_7Z34_046 | No text annotation | ||
| HL_7Z34_051 | No text annotation | ||
| HL_7Z34_052 | Mini UNCG | ||
| HL_7Z34_055 | No text annotation | ||
| HL_7Z34_057 | No text annotation | ||
| HL_7Z34_059 | Externally structured | ||
| HL_7Z34_060 | Pseudoknot geometry | ||
| HL_7Z34_064 | No text annotation | ||
| HL_7Z34_066 | No text annotation | ||
| HL_7Z34_082 | tRNA anticodon loop | ||
| HL_7Z34_071 | No text annotation | ||
| HL_7Z34_074 | No text annotation | ||
| HL_7Z34_075 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7Z34_002 | 1/1/13:15, 1/3/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_7Z34_127 | 1/1/32:38, 1/1/45:52 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4V9F_006 IL_62167.3 | |
| IL_7Z34_004 | 1/1/82:89, 1/1/97:103 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_7Z34_005 | 1/1/123:124, 1/1/144:149 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_7Z34_006 | 1/1/125:127, 1/1/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_7Z34_011 | 1/1/189:191, 1/1/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7Z34_013 | 1/1/376:379, 1/1/390:403 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_7Z34_014 | 1/1/404:410, 1/3/13:19 | Triple sheared with non-canonical cWW | geometric IL_5TBW_015 NA | |
| IL_7Z34_015 | 1/1/429:431, 1/1/628:630 | Isolated non-canonical cWW pair | geometric IL_5TBW_016 NA | |
| IL_7Z34_150 | 1/1/512:513, 1/1/577:579 | Single bulged A | homologous IL_8P9A_246 IL_14190.2 | |
| IL_7Z34_018 | 1/1/517:525, 1/1/567:573 | No text annotation | geometric IL_5TBW_019 NA | |
| IL_7Z34_019 | 1/1/530:539, 1/1/552:562 | No text annotation | ||
| IL_7Z34_020 | 1/1/668:670, 1/1/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_7Z34_021 | 1/1/680:684, 1/1/696:700 | No text annotation | homologous IL_8C3A_024 NA | |
| IL_7Z34_023 | 1/1/752:753, 1/1/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_7Z34_026 | 1/1/803:805, 1/1/938:940 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_01003.4 | |
| IL_7Z34_027 | 1/1/805:809, 1/1/931:938 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_7Z34_028 | 1/1/833:838, 1/1/855:861 | No text annotation | geometric IL_4LFB_055 IL_57885.2 | |
| IL_7Z34_030 | 1/1/873:875, 1/1/886:887 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_7Z34_031 | 1/1/907:909, 1/1/919:923 | Multiple bulged bases | geometric IL_7A0S_021 IL_89509.1 | |
| IL_7Z34_032 | 1/1/954:956, 1/1/965:967 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_7Z34_034 | 1/1/977:982, 1/1/1101:1104 | Kink-turn related | homologous IL_8C3A_039 NA | |
| IL_7Z34_035 | 1/1/983:985, 1/1/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_7Z34_132 | 1/1/991:1020, 1/1/1032:1058 | No text annotation | ||
| IL_7Z34_037 | 1/1/1074:1076, 1/1/1083:1084 | Single bulged A | geometric IL_5TBW_045 NA | |
| IL_7Z34_039 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7Z34_040 | 1/1/1173:1182, 1/1/1324:1326 | Isolated non-canonical cWW pair | geometric IL_1RPU_001 IL_01003.4 | |
| IL_7Z34_041 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_7Z34_042 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_7Z34_043 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_7Z34_044 | 1/1/1218:1226, 1/1/1283:1287 | No text annotation | ||
| IL_7Z34_047 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7Z34_048 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_7Z34_049 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_7Z34_050 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_7Z34_051 | 1/1/1444:1450, 1/1/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_7Z34_151 | 1/1/1501:1505, 1/1/1513:1515 | C-loop | homologous IL_8P9A_290 IL_63596.12 | |
| IL_7Z34_053 | 1/1/1532:1536, 1/1/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_7Z34_056 | 1/1/1623:1624, 1/1/1819:1822 | No text annotation | homologous IL_8C3A_483 NA | |
| IL_7Z34_057 | 1/1/1627:1631, 1/1/1811:1816 | No text annotation | homologous IL_8C3A_072 NA | |
| IL_7Z34_152 | 1/1/1645:1649, 1/1/1806:1810 | Triple sheared | geometric IL_8P9A_295 IL_15190.2 | |
| IL_7Z34_061 | 1/1/1694:1698, 1/1/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_7Z34_137 | 1/1/1702:1707, 1/1/1737:1743 | No text annotation | homologous IL_8P9A_300 IL_00680.1 | |
| IL_7Z34_063 | 1/1/1711:1717, 1/1/1727:1733 | No text annotation | homologous IL_8C3A_079 NA | |
| IL_7Z34_064 | 1/1/1882:1889, 1/1/2346:2350 | No text annotation | ||
| IL_7Z34_065 | 1/1/1895:1897, 1/1/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_7Z34_066 | 1/1/1898:1906, 1/1/2333:2337 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_7Z34_067 | 1/1/1918:1923, 1/1/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_7Z34_068 | 1/1/1940:1942, 1/1/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_7Z34_071 | 1/1/1988:1991, 1/1/2030:2033 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_7Z34_074 | 1/1/2156:2161, 1/1/2173:2180 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_7Z34_140 | 1/1/2200:2201, 1/1/2241:2244 | Major groove intercalation | homologous IL_8P9A_313 IL_71421.3 | |
| IL_7Z34_082 | 1/1/2396:2398, 1/1/2981:2984 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_7Z34_083 | 1/1/2409:2411, 1/1/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_7Z34_084 | 1/1/2412:2413, 1/1/2807:2810 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_7Z34_143 | 1/1/2423:2425, 1/1/2604:2607 | No text annotation | homologous IL_8P9A_323 IL_87316.2 | |
| IL_7Z34_089 | 1/1/2520:2526, 1/1/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_7Z34_090 | 1/1/2614:2615, 1/1/2625:2627 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_7Z34_153 | 1/1/2718:2720, 1/1/2737:2738 | Single stack bend | geometric IL_4V9F_081 IL_15011.3 | |
| IL_7Z34_154 | 1/1/2765:2773, 1/1/2787:2793 | No text annotation | ||
| IL_7Z34_095 | 1/1/2878:2882, 1/1/2940:2948 | No text annotation | ||
| IL_7Z34_096 | 1/1/2889:2892, 1/1/2909:2914 | No text annotation | homologous IL_8C3A_486 NA | |
| IL_7Z34_098 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_7Z34_100 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_7Z34_145 | 1/1/3046:3051, 1/1/3091:3095 | No text annotation | ||
| IL_7Z34_101 | 1/1/3047:3051, 1/1/3091:3094 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_7Z34_102 | 1/1/3054:3059, 1/1/3084:3088 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_7Z34_103 | 1/1/3063:3064, 1/1/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_7Z34_104 | 1/1/3103:3109, 1/1/3125:3131 | No text annotation | ||
| IL_7Z34_106 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation | homologous IL_8C3A_132 NA | |
| IL_7Z34_107 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U | geometric IL_5J7L_298 NA | |
| IL_7Z34_110 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs | geometric IL_3R2D_002 IL_71194.2 | |
| IL_7Z34_111 | 1/1/3300:3303, 1/1/3311:3314 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_7Z34_112 | 1/1/3318:3320, 1/1/3387:3388 | Single bulged U | homologous IL_8C3A_136 NA | |
| IL_7Z34_113 | 1/1/3324:3325, 1/1/3381:3383 | Single bulged U | homologous IL_8C3A_137 NA | |
| IL_7Z34_114 | 1/1/3328:3330, 1/1/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_7Z34_115 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_7Z34_116 | 1/1/3340:3345, 1/1/3360:3364 | No text annotation | ||
| IL_7Z34_120 | 1/2/28:29, 1/2/49:52 | No text annotation | homologous IL_8C3A_145 NA | |
| IL_7Z34_121 | 1/2/29:30, 1/2/47:49 | Single stack bend | geometric IL_7A0S_083 IL_15011.3 | |
| IL_7Z34_122 | 1/2/32:36, 1/2/41:45 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_7Z34_123 | 1/2/72:80, 1/2/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_7Z34_125 | 1/3/44:64, 1/3/96:100 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_7Z34_126 | 1/3/64:66, 1/3/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7Z34_001 | Single bulged C | ||
| IL_7Z34_003 | tSH-tHW-tHH-tHS | ||
| IL_7Z34_128 | No text annotation | ||
| IL_7Z34_007 | Single stack bend | ||
| IL_7Z34_129 | Other IL | ||
| IL_7Z34_008 | No text annotation | ||
| IL_7Z34_148 | Single stack bend | ||
| IL_7Z34_009 | No text annotation | ||
| IL_7Z34_010 | No text annotation | ||
| IL_7Z34_149 | No text annotation | ||
| IL_7Z34_012 | Single bulged A | ||
| IL_7Z34_016 | No text annotation | ||
| IL_7Z34_130 | Tandem non-canonical cWW pairs | ||
| IL_7Z34_017 | No text annotation | ||
| IL_7Z34_022 | No text annotation | ||
| IL_7Z34_024 | Single bulged U | ||
| IL_7Z34_025 | No text annotation | ||
| IL_7Z34_029 | Major groove platform with extra cWW | ||
| IL_7Z34_033 | No text annotation | ||
| IL_7Z34_131 | No text annotation | ||
| IL_7Z34_036 | Isolated non-canonical cWW pair | ||
| IL_7Z34_133 | Isolated non-canonical cWW pair | ||
| IL_7Z34_038 | Isolated non-canonical cWW pair | ||
| IL_7Z34_134 | Tandem non-canonical cWW pairs | ||
| IL_7Z34_045 | No text annotation | ||
| IL_7Z34_046 | Major groove platform with extra cWW | ||
| IL_7Z34_052 | No text annotation | ||
| IL_7Z34_054 | No text annotation | ||
| IL_7Z34_135 | Single stack bend | ||
| IL_7Z34_055 | No text annotation | ||
| IL_7Z34_136 | No text annotation | ||
| IL_7Z34_058 | Isolated non-canonical cWW pair | ||
| IL_7Z34_059 | Single bulged C | ||
| IL_7Z34_060 | Single stack bend | ||
| IL_7Z34_062 | No text annotation | ||
| IL_7Z34_069 | No text annotation | ||
| IL_7Z34_138 | No text annotation | ||
| IL_7Z34_070 | Minor groove platform | ||
| IL_7Z34_139 | No text annotation | ||
| IL_7Z34_072 | Isolated cWH basepair | ||
| IL_7Z34_073 | Single bulged A | ||
| IL_7Z34_075 | No text annotation | ||
| IL_7Z34_076 | No text annotation | ||
| IL_7Z34_077 | Single bulged U | ||
| IL_7Z34_078 | No text annotation | ||
| IL_7Z34_141 | No text annotation | ||
| IL_7Z34_079 | No text annotation | ||
| IL_7Z34_080 | No text annotation | ||
| IL_7Z34_081 | No text annotation | ||
| IL_7Z34_142 | Isolated non-canonical cWW pair | ||
| IL_7Z34_085 | Double sheared | ||
| IL_7Z34_086 | Minor groove platform | ||
| IL_7Z34_144 | No text annotation | ||
| IL_7Z34_087 | No text annotation | ||
| IL_7Z34_088 | No text annotation | ||
| IL_7Z34_091 | Isolated tHS basepair with bulges | ||
| IL_7Z34_092 | No text annotation | ||
| IL_7Z34_093 | Single stack bend | ||
| IL_7Z34_094 | No text annotation | ||
| IL_7Z34_097 | Single bulged A | ||
| IL_7Z34_099 | Isolated non-canonical cWW pair | ||
| IL_7Z34_105 | Single bulged A | ||
| IL_7Z34_146 | No text annotation | ||
| IL_7Z34_108 | No text annotation | ||
| IL_7Z34_109 | Other IL | ||
| IL_7Z34_117 | Multiple bulged bases | ||
| IL_7Z34_118 | Single bulged A | ||
| IL_7Z34_119 | No text annotation | ||
| IL_7Z34_124 | Isolated non-canonical cWW pair | ||
| IL_7Z34_147 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7Z34_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_7Z34_029 | 1/1/113:124, 1/1/144:158, 1/1/263:267 | No text annotation | ||
| J3_7Z34_019 | 1/1/340:356, 1/1/363:368, 1/3/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_7Z34_002 | 1/1/369:376, 1/1/403:404, 1/3/19:20 | No text annotation | homologous J3_8P9A_046 J3_68715.1 | |
| J3_7Z34_020 | 1/1/435:442, 1/1/492:495, 1/1/618:624 | No text annotation | ||
| J3_7Z34_003 | 1/1/501:503, 1/1/588:597, 1/1/606:612 | No text annotation | ||
| J3_7Z34_004 | 1/1/814:820, 1/1/905:907, 1/1/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_7Z34_005 | 1/1/828:831, 1/1/863:868, 1/1/891:897 | No text annotation | ||
| J3_7Z34_021 | 1/1/986:987, 1/1/1062:1066, 1/1/1092:1098 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_7Z34_007 | 1/1/1479:1485, 1/1/1857:1859, 1/1/1871:1874 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_7Z34_008 | 1/1/1488:1491, 1/1/1837:1843, 1/1/1852:1854 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_7Z34_009 | 1/1/1526:1531, 1/1/1591:1595, 1/1/1612:1613 | No text annotation | homologous J3_8P9A_055 J3_94309.1 | |
| J3_7Z34_030 | 1/1/1537:1542, 1/1/1551:1564, 1/1/1575:1584 | No text annotation | ||
| J3_7Z34_031 | 1/1/1631:1632, 1/1/1641:1645, 1/1/1810:1811 | No text annotation | homologous J3_8CRE_017 NA | |
| J3_7Z34_023 | 1/1/1654:1658, 1/1/1791:1792, 1/1/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_7Z34_012 | 1/1/2432:2435, 1/1/2512:2517, 1/1/2590:2597 | No text annotation | homologous J3_8C3A_008 NA | |
| J3_7Z34_024 | 1/1/2529:2532, 1/1/2547:2563, 1/1/2578:2581 | No text annotation | homologous J3_8P9A_060 J3_76247.1 | |
| J3_7Z34_025 | 1/1/2651:2653, 1/1/2754:2765, 1/1/2793:2798 | No text annotation | homologous J3_8P9A_061 J3_04772.1 | |
| J3_7Z34_014 | 1/1/2664:2666, 1/1/2690:2692, 1/1/2701:2706 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_7Z34_015 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_7Z34_032 | 1/1/3163:3176, 1/1/3212:3220, 1/1/3265:3287 | No text annotation | ||
| J3_7Z34_016 | 1/1/3298:3300, 1/1/3314:3318, 1/1/3388:3390 | No text annotation | geometric J3_5TBW_015 NA | |
| J3_7Z34_027 | 1/1/3298:3303, 1/1/3311:3318, 1/1/3388:3390 | No text annotation | ||
| J3_7Z34_017 | 1/2/9:14, 1/2/66:67, 1/2/111:112 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_7Z34_028 | 1/3/44:45, 1/3/58:64, 1/3/96:100 | No text annotation | homologous J3_8C3A_060 NA | |
| J4_7Z34_001 | 1/1/112:113, 1/1/267:272, 1/1/293:299, 1/1/316:319 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_7Z34_002 | 1/1/185:189, 1/1/205:208, 1/1/212:214, 1/1/226:231 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_7Z34_003 | 1/1/1451:1457, 1/1/1475:1476, 1/1/1877:1880, 1/1/2352:2353 | No text annotation | homologous J4_8P9A_014 J4_34212.1 | |
| J4_7Z34_004 | 1/1/1492:1496, 1/1/1520:1525, 1/1/1614:1615, 1/1/1829:1836 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_7Z34_005 | 1/1/1674:1675, 1/1/1693:1694, 1/1/1752:1753, 1/1/1772:1773 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_7Z34_010 | 1/1/2130:2134, 1/1/2146:2150, 1/1/2186:2190, 1/1/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_7Z34_008 | 1/1/2654:2658, 1/1/2712:2716, 1/1/2740:2742, 1/1/2751:2753 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_7Z34_009 | 1/1/3010:3012, 1/1/3042:3043, 1/1/3098:3100, 1/1/3134:3136 | No text annotation | homologous J4_8C3A_009 NA | |
| J5_7Z34_001 | 1/1/20:22, 1/3/35:42, 1/3/102:107, 1/3/115:116, 1/3/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_7Z34_002 | 1/1/658:663, 1/1/799:802, 1/1/941:944, 1/1/1375:1376, 1/1/1431:1437 | No text annotation | ||
| J5_7Z34_003 | 1/1/675:678, 1/1/702:706, 1/1/713:721, 1/1/749:751, 1/1/782:787 | No text annotation | homologous J5_8P9A_012 J5_56629.1 | |
| J5_7Z34_006 | 1/1/1898:1914, 1/1/1938:1939, 1/1/2109:2110, 1/1/2114:2122, 1/1/2331:2337 | No text annotation | ||
| J5_7Z34_007 | 1/1/2415:2419, 1/1/2611:2614, 1/1/2627:2628, 1/1/2650:2651, 1/1/2798:2805 | No text annotation | ||
| J6_7Z34_001 | 1/1/22:28, 1/1/56:68, 1/1/75:79, 1/1/106:110, 1/1/321:331, 1/3/32:35 | No text annotation | ||
| J6_7Z34_003 | 1/1/2415:2419, 1/1/2611:2614, 1/1/2627:2628, 1/1/2650:2653, 1/1/2754:2765, 1/1/2793:2805 | No text annotation | ||
| J6_7Z34_002 | 1/1/2415:2420, 1/1/2610:2614, 1/1/2627:2628, 1/1/2650:2653, 1/1/2754:2765, 1/1/2793:2805 | No text annotation | ||
| J7_7Z34_002 | 1/1/949:956, 1/1/965:968, 1/1/1114:1117, 1/1/1141:1146, 1/1/1157:1161, 1/1/1338:1339, 1/1/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7Z34_018 | No text annotation | ||
| J3_7Z34_006 | No text annotation | ||
| J3_7Z34_022 | No text annotation | ||
| J3_7Z34_010 | No text annotation | ||
| J3_7Z34_011 | No text annotation | ||
| J3_7Z34_013 | No text annotation | ||
| J3_7Z34_026 | No text annotation | ||
| J4_7Z34_006 | No text annotation | ||
| J4_7Z34_007 | No text annotation | ||
| J5_7Z34_004 | No text annotation | ||
| J5_7Z34_005 | No text annotation | ||
| J7_7Z34_001 | No text annotation |
Coloring options: