RNA 3D Hub //

7Z34 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7Z34_0011/1/38:45No text annotation
homologous
HL_8C3A_001
NA
HL_7Z34_0021/1/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_7Z34_0031/1/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_7Z34_0041/1/132:136No text annotation
homologous
HL_8C3A_004
NA
HL_7Z34_0051/1/194:201T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_7Z34_0061/1/208:212No text annotation
homologous
HL_8C3A_006
NA
HL_7Z34_0071/1/216:224T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_7Z34_0081/1/278:287No text annotation
homologous
HL_8C3A_008
NA
HL_7Z34_0091/1/303:312Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_7Z34_0101/1/357:362GNRA
homologous
HL_8C3A_010
NA
HL_7Z34_0111/1/382:387GNRA
homologous
HL_8C3A_011
NA
HL_7Z34_0131/1/541:550No text annotation
HL_7Z34_0141/1/599:604GNRA variation
geometric
HL_5J7L_180
HL_37824.8
HL_7Z34_0151/1/640:649T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_7Z34_0801/1/687:693No text annotation
geometric
HL_5J7L_151
HL_80922.2
HL_7Z34_0171/1/707:712GNRA
homologous
HL_8C3A_016
NA
HL_7Z34_0181/1/732:737No text annotation
geometric
HL_4WF9_011
HL_75660.5
HL_7Z34_0191/1/763:768No text annotation
homologous
HL_8C3A_018
NA
HL_7Z34_0201/1/844:849GNRA
homologous
HL_8C3A_019
NA
HL_7Z34_0211/1/876:885No text annotation
homologous
HL_8C3A_020
NA
HL_7Z34_0221/1/910:918No text annotation
homologous
HL_8C3A_021
NA
HL_7Z34_0231/1/958:963No text annotation
homologous
HL_8P9A_134
HL_70782.2
HL_7Z34_0241/1/1023:1029No text annotation
HL_7Z34_0251/1/1076:1083No text annotation
homologous
HL_8C3A_024
NA
HL_7Z34_0261/1/1126:1132GNRA
homologous
HL_8C3A_025
NA
HL_7Z34_0271/1/1148:1155No text annotation
homologous
HL_8C3A_026
NA
HL_7Z34_0281/1/1239:1249No text annotation
homologous
HL_8C3A_027
NA
HL_7Z34_0291/1/1267:1274GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_7Z34_0301/1/1347:1357Mini UNCG
geometric
HL_4WF9_037
HL_48778.2
HL_7Z34_0311/1/1403:1408GNRA
homologous
HL_8C3A_030
NA
HL_7Z34_0321/1/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_7Z34_0331/1/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_8C3A_032
NA
HL_7Z34_0341/1/1544:1549GNRA variation
homologous
HL_8C3A_033
NA
HL_7Z34_0351/1/1566:1572No text annotation
geometric
HL_2Y8Y_001
HL_81100.2
HL_7Z34_0361/1/1599:1608No text annotation
homologous
HL_8C3A_035
NA
HL_7Z34_0371/1/1634:1639GNRA
homologous
HL_8C3A_036
NA
HL_7Z34_0381/1/1680:1688No text annotation
homologous
HL_8C3A_037
NA
HL_7Z34_0391/1/1719:1725No text annotation
homologous
HL_8C3A_038
NA
HL_7Z34_0401/1/1760:1765No text annotation
homologous
HL_8C3A_039
NA
HL_7Z34_0411/1/1792:1796No text annotation
homologous
HL_8C3A_040
NA
HL_7Z34_0421/1/1844:1851No text annotation
homologous
HL_8C3A_041
NA
HL_7Z34_0431/1/1862:1868GNRA
homologous
HL_8C3A_042
NA
HL_7Z34_0441/1/1923:1928UNCG
geometric
HL_4WF9_040
HL_34617.5
HL_7Z34_0451/1/2008:2013No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_7Z34_0461/1/2062:2074No text annotation
HL_7Z34_0471/1/2110:2114No text annotation
HL_7Z34_0481/1/2135:2145No text annotation
homologous
HL_8C3A_046
NA
HL_7Z34_0811/1/2163:2171No text annotation
geometric
HL_7KI3_001
HL_75660.5
HL_7Z34_0491/1/2164:2170GNRA
homologous
HL_8C3A_047
NA
HL_7Z34_0501/1/2220:2225GNRA
homologous
HL_8C3A_048
NA
HL_7Z34_0521/1/2291:2301Mini UNCG
geometric
HL_4YAZ_004
HL_48778.2
HL_7Z34_0531/1/2369:2378No text annotation
homologous
HL_8C3A_051
NA
HL_7Z34_0541/1/2465:2490No text annotation
geometric
HL_8C3A_054
NA
HL_7Z34_0551/1/2533:2546No text annotation
HL_7Z34_0561/1/2567:2574No text annotation
geometric
HL_5TBW_012
NA
HL_7Z34_0571/1/2616:2624No text annotation
homologous
HL_8C3A_055
NA
HL_7Z34_0581/1/2633:2645No text annotation
homologous
HL_8C3A_056
NA
HL_7Z34_0591/1/2673:2681Externally structured
geometric
HL_8C3A_022
NA
HL_7Z34_0601/1/2693:2700Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_7Z34_0611/1/2724:2732No text annotation
homologous
HL_8C3A_059
NA
HL_7Z34_0621/1/2744:2749GNRA
homologous
HL_8C3A_060
NA
HL_7Z34_0631/1/2776:2784Pseudoknot geometry
homologous
HL_8C3A_061
NA
HL_7Z34_0641/1/2835:2853No text annotation
HL_7Z34_0651/1/2896:2905No text annotation
geometric
HL_4WF9_011
HL_75660.5
HL_7Z34_0661/1/2918:2928No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_7Z34_0671/1/2963:2968GNRA
homologous
HL_8C3A_065
NA
HL_7Z34_0681/1/3025:3030GNRA related
geometric
HL_5J7L_179
HL_04783.2
HL_7Z34_0691/1/3068:3073Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_7Z34_0701/1/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_7Z34_0711/1/3194:3197No text annotation
geometric
HL_5TBW_068
NA
HL_7Z34_0721/1/3240:3247No text annotation
homologous
HL_8P9A_180
HL_07886.3
HL_7Z34_0731/1/3303:3311No text annotation
geometric
HL_5TBW_070
NA
HL_7Z34_0741/1/3350:3353No text annotation
geometric
HL_7RQB_009
NA
HL_7Z34_0751/2/36:41No text annotation
homologous
HL_8C3A_073
NA
HL_7Z34_0761/2/88:93GNRA
homologous
HL_7A0S_070
HL_37824.8
HL_7Z34_0831/3/47:56Pseudoknot with intercalation
homologous
HL_8C3A_229
NA
HL_7Z34_0771/3/68:91No text annotation
homologous
HL_8C3A_075
NA
HL_7Z34_0781/3/108:114No text annotation
geometric
HL_1WZ2_007
HL_75660.5
HL_7Z34_0791/3/124:129No text annotation
geometric
HL_2Y8W_001
HL_81100.2

Problematic loops

#loop idProblemSequence
HL_7Z34_012No text annotation
HL_7Z34_016No text annotation
HL_7Z34_051No text annotation
HL_7Z34_082tRNA anticodon loop

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7Z34_0011/1/7:8,
1/3/150:152		Single bulged C
homologous
IL_8C3A_002
NA
IL_7Z34_0021/1/13:15,
1/3/144:145		Single bulged U
homologous
IL_8C3A_003
NA
IL_7Z34_1271/1/32:38,
1/1/45:52		8x7 Sarcin-Ricin; G-bulge
geometric
IL_4V9F_006
IL_04346.10
IL_7Z34_0041/1/82:89,
1/1/97:103		No text annotation
homologous
IL_8C3A_006
NA
IL_7Z34_0051/1/123:124,
1/1/144:149		No text annotation
geometric
IL_5TBW_007
NA
IL_7Z34_0061/1/125:127,
1/1/141:143		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_7Z34_0071/1/163:165,
1/1/257:258		Single stack bend
geometric
IL_5TBW_009
NA
IL_7Z34_1291/1/163:166,
1/1/256:258		Other IL
geometric
IL_5TBW_064
NA
IL_7Z34_0081/1/169:172,
1/1/247:253		No text annotation
IL_7Z34_1481/1/172:173,
1/1/245:247		Single stack bend
geometric
IL_8P9A_298
IL_90729.1
IL_7Z34_1491/1/177:179,
1/1/237:241		No text annotation
IL_7Z34_0111/1/189:191,
1/1/204:205		Single bulged U
homologous
IL_8C3A_013
NA
IL_7Z34_0121/1/337:339,
1/3/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_7Z34_0131/1/376:379,
1/1/390:403		No text annotation
geometric
IL_5TBW_014
NA
IL_7Z34_0141/1/404:410,
1/3/13:19		Triple sheared with non-canonical cWW
geometric
IL_5TBW_015
NA
IL_7Z34_0151/1/429:431,
1/1/628:630		Isolated non-canonical cWW pair
geometric
IL_5TBW_016
NA
IL_7Z34_0161/1/445:449,
1/1/485:489		No text annotation
IL_7Z34_1501/1/512:513,
1/1/577:579		Single bulged A
homologous
IL_8P9A_246
IL_31462.7
IL_7Z34_0181/1/517:525,
1/1/567:573		No text annotation
geometric
IL_5TBW_019
NA
IL_7Z34_0191/1/530:539,
1/1/552:562		No text annotation
IL_7Z34_0201/1/668:670,
1/1/792:794		Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_7Z34_0211/1/680:684,
1/1/696:700		No text annotation
homologous
IL_8C3A_024
NA
IL_7Z34_0221/1/725:728,
1/1/741:745		No text annotation
homologous
IL_8C3A_025
NA
IL_7Z34_0231/1/752:753,
1/1/779:781		Single bulged A
homologous
IL_8C3A_026
NA
IL_7Z34_0241/1/755:756,
1/1/775:777		Single bulged U
homologous
IL_8C3A_027
NA
IL_7Z34_0251/1/758:763,
1/1/768:773		No text annotation
geometric
IL_5TBW_026
NA
IL_7Z34_0261/1/803:805,
1/1/938:940		Isolated non-canonical cWW pair
geometric
IL_4WF9_020
IL_87907.2
IL_7Z34_0271/1/805:809,
1/1/931:938		No text annotation
homologous
IL_8C3A_030
NA
IL_7Z34_0281/1/833:838,
1/1/855:861		No text annotation
geometric
IL_4LFB_055
IL_85536.2
IL_7Z34_0291/1/869:872,
1/1/888:890		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_7Z34_0301/1/873:875,
1/1/886:887		Single bulged U
homologous
IL_8C3A_035
NA
IL_7Z34_0311/1/907:909,
1/1/919:923		Multiple bulged bases
geometric
IL_7A0S_021
IL_06549.2
IL_7Z34_0321/1/954:956,
1/1/965:967		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_7Z34_0331/1/969:970,
1/1/1111:1113		No text annotation
homologous
IL_8C3A_038
NA
IL_7Z34_0341/1/977:982,
1/1/1101:1104		Kink-turn related
homologous
IL_8C3A_039
NA
IL_7Z34_0351/1/983:985,
1/1/1099:1100		Single bulged G
homologous
IL_8C3A_040
NA
IL_7Z34_1321/1/991:1020,
1/1/1032:1058		No text annotation
IL_7Z34_0361/1/1069:1071,
1/1/1087:1089		Isolated non-canonical cWW pair
homologous
IL_8C3A_047
NA
IL_7Z34_0371/1/1074:1076,
1/1/1083:1084		Single bulged A
geometric
IL_5TBW_045
NA
IL_7Z34_0381/1/1120:1122,
1/1/1136:1138		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_7Z34_0391/1/1167:1171,
1/1/1328:1332		UAA/GAN
homologous
IL_8C3A_051
NA
IL_7Z34_0401/1/1173:1182,
1/1/1324:1326		Isolated non-canonical cWW pair
geometric
IL_1RPU_001
IL_87907.2
IL_7Z34_0411/1/1187:1194,
1/1/1314:1319		No text annotation
homologous
IL_8C3A_054
NA
IL_7Z34_0421/1/1194:1205,
1/1/1299:1314		No text annotation
geometric
IL_5TBW_052
NA
IL_7Z34_0431/1/1207:1209,
1/1/1296:1297		Single bulged U
homologous
IL_8C3A_056
NA
IL_7Z34_0441/1/1218:1226,
1/1/1283:1287		No text annotation
IL_7Z34_0451/1/1234:1238,
1/1/1250:1254		No text annotation
homologous
IL_8C3A_058
NA
IL_7Z34_0461/1/1262:1266,
1/1/1275:1277		Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_7Z34_0471/1/1376:1378,
1/1/1428:1431		No text annotation
homologous
IL_8C3A_061
NA
IL_7Z34_0481/1/1385:1387,
1/1/1420:1421		Single bulged A
homologous
IL_8C3A_062
NA
IL_7Z34_0491/1/1388:1395,
1/1/1415:1419		Kink-turn
homologous
IL_8C3A_063
NA
IL_7Z34_0501/1/1398:1400,
1/1/1411:1412		Single bulged A
geometric
IL_4V88_399
NA
IL_7Z34_0511/1/1444:1450,
1/1/2354:2359		No text annotation
homologous
IL_8C3A_065
NA
IL_7Z34_1511/1/1501:1505,
1/1/1513:1515		C-loop
homologous
IL_8P9A_290
IL_63596.11
IL_7Z34_0531/1/1532:1536,
1/1/1585:1590		UAA/GAN
homologous
IL_8C3A_067
NA
IL_7Z34_0541/1/1565:1566,
1/1/1572:1574		No text annotation
IL_7Z34_1351/1/1616:1618,
1/1/1827:1828		Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_7Z34_1361/1/1618:1621,
1/1/1824:1827		No text annotation
IL_7Z34_0561/1/1623:1624,
1/1/1819:1822		No text annotation
homologous
IL_8C3A_483
NA
IL_7Z34_0571/1/1627:1631,
1/1/1811:1816		No text annotation
homologous
IL_8C3A_072
NA
IL_7Z34_1521/1/1645:1649,
1/1/1806:1810		Triple sheared
geometric
IL_8P9A_295
IL_50730.2
IL_7Z34_0581/1/1661:1663,
1/1/1786:1788		Isolated non-canonical cWW pair
homologous
IL_8C3A_074
NA
IL_7Z34_0591/1/1669:1670,
1/1/1778:1780		Single bulged C
homologous
IL_8C3A_075
NA
IL_7Z34_0601/1/1670:1671,
1/1/1776:1778		Single stack bend
geometric
IL_4WF9_007
IL_90729.1
IL_7Z34_0611/1/1694:1698,
1/1/1747:1752		No text annotation
homologous
IL_8C3A_077
NA
IL_7Z34_1371/1/1702:1707,
1/1/1737:1743		No text annotation
homologous
IL_8P9A_300
IL_23038.1
IL_7Z34_0631/1/1711:1717,
1/1/1727:1733		No text annotation
homologous
IL_8C3A_079
NA
IL_7Z34_0641/1/1882:1889,
1/1/2346:2350		No text annotation
IL_7Z34_0651/1/1895:1897,
1/1/2338:2340		No text annotation
homologous
IL_8C3A_081
NA
IL_7Z34_0661/1/1898:1906,
1/1/2333:2337		No text annotation
homologous
IL_8C3A_484
NA
IL_7Z34_0671/1/1918:1923,
1/1/1928:1934		No text annotation
homologous
IL_8C3A_084
NA
IL_7Z34_0681/1/1940:1942,
1/1/2106:2108		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_7Z34_0691/1/1971:1977,
1/1/2045:2051		No text annotation
IL_7Z34_0701/1/1980:1981,
1/1/2040:2042		Minor groove platform
geometric
IL_6DLR_003
IL_51454.3
IL_7Z34_0711/1/1988:1991,
1/1/2030:2033		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_7Z34_0721/1/1994:1996,
1/1/2025:2027		Isolated cWH basepair
geometric
IL_4E5C_001
IL_10167.6
IL_7Z34_0731/1/2128:2129,
1/1/2323:2325		Single bulged A
homologous
IL_8C3A_087
NA
IL_7Z34_0741/1/2156:2161,
1/1/2173:2180		No text annotation
homologous
IL_8C3A_088
NA
IL_7Z34_0751/1/2196:2199,
1/1/2245:2246		No text annotation
homologous
IL_8C3A_089
NA
IL_7Z34_1401/1/2200:2201,
1/1/2241:2244		Major groove intercalation
homologous
IL_8P9A_313
IL_82107.5
IL_7Z34_0771/1/2204:2206,
1/1/2237:2238		Single bulged U
geometric
IL_6MWN_006
IL_89505.4
IL_7Z34_0781/1/2206:2210,
1/1/2235:2237		No text annotation
homologous
IL_8P9A_315
IL_36516.3
IL_7Z34_1411/1/2211:2217,
1/1/2228:2234		No text annotation
homologous
IL_8C3A_093
NA
IL_7Z34_0801/1/2277:2288,
1/1/2304:2307		No text annotation
homologous
IL_8C3A_095
NA
IL_7Z34_0811/1/2391:2394,
1/1/2986:2988		No text annotation
homologous
IL_8C3A_096
NA
IL_7Z34_0821/1/2396:2398,
1/1/2981:2984		No text annotation
homologous
IL_8C3A_097
NA
IL_7Z34_0831/1/2409:2411,
1/1/2811:2812		Single bulged U
homologous
IL_8C3A_098
NA
IL_7Z34_0841/1/2412:2413,
1/1/2807:2810		Minor groove platform
homologous
IL_8C3A_099
NA
IL_7Z34_1431/1/2423:2425,
1/1/2604:2607		No text annotation
homologous
IL_8P9A_323
IL_85599.2
IL_7Z34_0861/1/2444:2445,
1/1/2501:2503		Minor groove platform
geometric
IL_7A0S_028
IL_51454.3
IL_7Z34_0871/1/2448:2452,
1/1/2495:2498		No text annotation
IL_7Z34_0881/1/2452:2463,
1/1/2492:2495		No text annotation
IL_7Z34_0891/1/2520:2526,
1/1/2584:2587		No text annotation
homologous
IL_8C3A_106
NA
IL_7Z34_0901/1/2614:2615,
1/1/2625:2627		Single bulged A
homologous
IL_8C3A_107
NA
IL_7Z34_0911/1/2666:2668,
1/1/2686:2690		Isolated tHS basepair with bulges
geometric
IL_4WF9_086
IL_61476.2
IL_7Z34_1531/1/2718:2720,
1/1/2737:2738		Single stack bend
geometric
IL_4V9F_081
IL_26793.1
IL_7Z34_0931/1/2720:2721,
1/1/2735:2737		Single stack bend
geometric
IL_4V9F_081
IL_26793.1
IL_7Z34_1541/1/2765:2773,
1/1/2787:2793		No text annotation
IL_7Z34_0951/1/2878:2882,
1/1/2940:2948		No text annotation
IL_7Z34_0961/1/2889:2892,
1/1/2909:2914		No text annotation
homologous
IL_8C3A_486
NA
IL_7Z34_0971/1/2960:2961,
1/1/2970:2972		Single bulged A
homologous
IL_8C3A_122
NA
IL_7Z34_0981/1/3004:3007,
1/1/3139:3144		Double sheared
homologous
IL_8C3A_123
NA
IL_7Z34_0991/1/3012:3014,
1/1/3040:3042		Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_7Z34_1001/1/3018:3025,
1/1/3030:3036		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_7Z34_1451/1/3046:3051,
1/1/3091:3095		No text annotation
IL_7Z34_1011/1/3047:3051,
1/1/3091:3094		Major groove minor groove platform with tHH
homologous
IL_8C3A_126
NA
IL_7Z34_1021/1/3054:3059,
1/1/3084:3088		UAA/GAN related
homologous
IL_8C3A_127
NA
IL_7Z34_1031/1/3063:3064,
1/1/3077:3080		No text annotation
homologous
IL_8C3A_128
NA
IL_7Z34_1041/1/3103:3109,
1/1/3125:3131		No text annotation
IL_7Z34_1051/1/3177:3179,
1/1/3210:3211		Single bulged A
geometric
IL_6WPI_001
IL_31462.7
IL_7Z34_1061/1/3179:3188,
1/1/3204:3210		No text annotation
homologous
IL_8C3A_132
NA
IL_7Z34_1071/1/3193:3194,
1/1/3197:3199		Single bulged U
geometric
IL_5J7L_298
IL_89505.4
IL_7Z34_1461/1/3225:3229,
1/1/3258:3260		No text annotation
homologous
IL_8P9A_353
IL_82741.2
IL_7Z34_1091/1/3231:3235,
1/1/3252:3256		Other IL
geometric
IL_4WF9_084
NA
IL_7Z34_1101/1/3235:3238,
1/1/3249:3252		Tandem non-canonical cWW pairs
geometric
IL_3R2D_002
IL_77658.1
IL_7Z34_1111/1/3300:3303,
1/1/3311:3314		Tandem non-canonical cWW pairs
homologous
IL_8C3A_135
NA
IL_7Z34_1121/1/3318:3320,
1/1/3387:3388		Single bulged U
homologous
IL_8C3A_136
NA
IL_7Z34_1131/1/3324:3325,
1/1/3381:3383		Single bulged U
homologous
IL_8C3A_137
NA
IL_7Z34_1141/1/3328:3330,
1/1/3373:3378		No text annotation
homologous
IL_8C3A_138
NA
IL_7Z34_1151/1/3332:3337,
1/1/3367:3371		No text annotation
homologous
IL_8C3A_139
NA
IL_7Z34_1161/1/3340:3345,
1/1/3360:3364		No text annotation
IL_7Z34_1171/1/3349:3350,
1/1/3353:3356		Multiple bulged bases
homologous
IL_8C3A_142
NA
IL_7Z34_1181/2/15:16,
1/2/63:65		Single bulged A
homologous
IL_5TBW_372
NA
IL_7Z34_1191/2/21:27,
1/2/53:58		No text annotation
IL_7Z34_1201/2/28:29,
1/2/49:52		No text annotation
homologous
IL_8C3A_145
NA
IL_7Z34_1211/2/29:30,
1/2/47:49		Single stack bend
geometric
IL_7A0S_083
IL_26793.1
IL_7Z34_1221/2/32:36,
1/2/41:45		Symmetric double minor groove platform
homologous
IL_5TBW_376
NA
IL_7Z34_1231/2/72:80,
1/2/100:106		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_7Z34_1241/2/84:87,
1/2/94:96		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_7Z34_1251/3/44:64,
1/3/96:100		No text annotation
geometric
IL_5TBW_144
NA
IL_7Z34_1261/3/64:66,
1/3/93:96		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA

Problematic loops

#loop idProblemSequence
IL_7Z34_003tSH-tHW-tHH-tHS
IL_7Z34_128No text annotation
IL_7Z34_009No text annotation
IL_7Z34_010No text annotation
IL_7Z34_130Tandem non-canonical cWW pairs
IL_7Z34_017No text annotation
IL_7Z34_131No text annotation
IL_7Z34_133Isolated non-canonical cWW pair
IL_7Z34_134Tandem non-canonical cWW pairs
IL_7Z34_052No text annotation
IL_7Z34_055No text annotation
IL_7Z34_062No text annotation
IL_7Z34_138No text annotation
IL_7Z34_139No text annotation
IL_7Z34_076No text annotation
IL_7Z34_079No text annotation
IL_7Z34_142Isolated non-canonical cWW pair
IL_7Z34_085Double sheared
IL_7Z34_144No text annotation
IL_7Z34_092No text annotation
IL_7Z34_094No text annotation
IL_7Z34_108No text annotation
IL_7Z34_147No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7Z34_0011/1/113:123,
1/1/149:158,
1/1/263:267		No text annotation
homologous
J3_8C3A_001
NA
J3_7Z34_0291/1/113:124,
1/1/144:158,
1/1/263:267		No text annotation
J3_7Z34_0191/1/340:356,
1/1/363:368,
1/3/21:24		No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_7Z34_0021/1/369:376,
1/1/403:404,
1/3/19:20		No text annotation
homologous
J3_8P9A_046
J3_60031.2
J3_7Z34_0201/1/435:442,
1/1/492:495,
1/1/618:624		No text annotation
J3_7Z34_0031/1/501:503,
1/1/588:597,
1/1/606:612		No text annotation
J3_7Z34_0041/1/814:820,
1/1/905:907,
1/1/923:926		No text annotation
homologous
J3_8C3A_003
NA
J3_7Z34_0051/1/828:831,
1/1/863:868,
1/1/891:897		No text annotation
J3_7Z34_0211/1/986:987,
1/1/1062:1066,
1/1/1092:1098		No text annotation
homologous
J3_8P9A_051
J3_09667.1
J3_7Z34_0061/1/1230:1232,
1/1/1256:1262,
1/1/1277:1279		No text annotation
homologous
J3_8C3A_005
NA
J3_7Z34_0071/1/1479:1485,
1/1/1857:1859,
1/1/1871:1874		No text annotation
homologous
J3_8C3A_006
NA
J3_7Z34_0081/1/1488:1491,
1/1/1837:1843,
1/1/1852:1854		No text annotation
homologous
J3_8C3A_007
NA
J3_7Z34_0091/1/1526:1531,
1/1/1591:1595,
1/1/1612:1613		No text annotation
homologous
J3_8P9A_055
J3_31965.2
J3_7Z34_0301/1/1537:1542,
1/1/1551:1564,
1/1/1575:1584		No text annotation
J3_7Z34_0311/1/1631:1632,
1/1/1641:1645,
1/1/1810:1811		No text annotation
homologous
J3_8CRE_017
J3_75962.2
J3_7Z34_0231/1/1654:1658,
1/1/1791:1792,
1/1/1796:1801		No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_7Z34_0111/1/1961:1971,
1/1/2051:2061,
1/1/2075:2080		No text annotation
J3_7Z34_0121/1/2432:2435,
1/1/2512:2517,
1/1/2590:2597		No text annotation
homologous
J3_8C3A_008
NA
J3_7Z34_0241/1/2529:2532,
1/1/2547:2563,
1/1/2578:2581		No text annotation
homologous
J3_8P9A_060
J3_28639.1
J3_7Z34_0251/1/2651:2653,
1/1/2754:2765,
1/1/2793:2798		No text annotation
homologous
J3_8P9A_061
J3_20992.1
J3_7Z34_0141/1/2664:2666,
1/1/2690:2692,
1/1/2701:2706		No text annotation
homologous
J3_8C3A_010
NA
J3_7Z34_0151/1/2886:2889,
1/1/2914:2916,
1/1/2930:2936		No text annotation
homologous
J3_8C3A_011
NA
J3_7Z34_0321/1/3163:3176,
1/1/3212:3220,
1/1/3265:3287		No text annotation
J3_7Z34_0161/1/3298:3300,
1/1/3314:3318,
1/1/3388:3390		No text annotation
geometric
J3_5TBW_015
NA
J3_7Z34_0271/1/3298:3303,
1/1/3311:3318,
1/1/3388:3390		No text annotation
J3_7Z34_0171/2/9:14,
1/2/66:67,
1/2/111:112		No text annotation
homologous
J3_5TBW_045
NA
J3_7Z34_0281/3/44:45,
1/3/58:64,
1/3/96:100		No text annotation
homologous
J3_8C3A_060
NA
J4_7Z34_0011/1/112:113,
1/1/267:272,
1/1/293:299,
1/1/316:319		No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_7Z34_0021/1/185:189,
1/1/205:208,
1/1/212:214,
1/1/226:231		No text annotation
homologous
J4_8P9A_013
J4_12410.1
J4_7Z34_0031/1/1451:1457,
1/1/1475:1476,
1/1/1877:1880,
1/1/2352:2353		No text annotation
homologous
J4_8P9A_014
J4_87855.1
J4_7Z34_0041/1/1492:1496,
1/1/1520:1525,
1/1/1614:1615,
1/1/1829:1836		No text annotation
homologous
J4_8C3A_004
NA
J4_7Z34_0051/1/1674:1675,
1/1/1693:1694,
1/1/1752:1753,
1/1/1772:1773		No text annotation
homologous
J4_8C3A_005
NA
J4_7Z34_0101/1/2130:2134,
1/1/2146:2150,
1/1/2186:2190,
1/1/2317:2322		No text annotation
homologous
J4_8P9A_017
J4_07509.2
J4_7Z34_0071/1/2192:2194,
1/1/2248:2249,
1/1/2267:2277,
1/1/2307:2315		No text annotation
J4_7Z34_0081/1/2654:2658,
1/1/2712:2716,
1/1/2740:2742,
1/1/2751:2753		No text annotation
homologous
J4_8C3A_008
NA
J4_7Z34_0091/1/3010:3012,
1/1/3042:3043,
1/1/3098:3100,
1/1/3134:3136		No text annotation
homologous
J4_8C3A_009
NA
J5_7Z34_0011/1/20:22,
1/3/35:42,
1/3/102:107,
1/3/115:116,
1/3/137:139		No text annotation
homologous
J5_8C3A_001
NA
J5_7Z34_0021/1/658:663,
1/1/799:802,
1/1/941:944,
1/1/1375:1376,
1/1/1431:1437		No text annotation
J5_7Z34_0031/1/675:678,
1/1/702:706,
1/1/713:721,
1/1/749:751,
1/1/782:787		No text annotation
homologous
J5_8P9A_012
J5_23272.1
J5_7Z34_0061/1/1898:1914,
1/1/1938:1939,
1/1/2109:2110,
1/1/2114:2122,
1/1/2331:2337		No text annotation
J5_7Z34_0071/1/2415:2419,
1/1/2611:2614,
1/1/2627:2628,
1/1/2650:2651,
1/1/2798:2805		No text annotation
J6_7Z34_0011/1/22:28,
1/1/56:68,
1/1/75:79,
1/1/106:110,
1/1/321:331,
1/3/32:35		No text annotation
J6_7Z34_0031/1/2415:2419,
1/1/2611:2614,
1/1/2627:2628,
1/1/2650:2653,
1/1/2754:2765,
1/1/2793:2805		No text annotation
J6_7Z34_0021/1/2415:2420,
1/1/2610:2614,
1/1/2627:2628,
1/1/2650:2653,
1/1/2754:2765,
1/1/2793:2805		No text annotation
J7_7Z34_0021/1/949:956,
1/1/965:968,
1/1/1114:1117,
1/1/1141:1146,
1/1/1157:1161,
1/1/1338:1339,
1/1/1365:1370		No text annotation

Problematic loops

#loop idProblemSequence
J3_7Z34_018No text annotation
J3_7Z34_022No text annotation
J3_7Z34_010No text annotation
J3_7Z34_013No text annotation
J3_7Z34_026No text annotation
J4_7Z34_006No text annotation
J5_7Z34_004No text annotation
J5_7Z34_005No text annotation
J7_7Z34_001No text annotation

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