HL_7Z34_053

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7Z34|1|1|A|2372, 7Z34|1|1|A|2373, 7Z34|1|1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z34_053 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.2027

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7Z34|1|1|G|2369
7Z34|1|1|G|2370
7Z34|1|1|G|2371
7Z34|1|1|A|2372
7Z34|1|1|A|2373
7Z34|1|1|C|2374
7Z34|1|1|G|2375
7Z34|1|1|G|2376
7Z34|1|1|G|2377
7Z34|1|1|C|2378

Current chains

Chain 1

35S pre-ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3