HL_7Z34_060

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z34_060 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.1427

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

7Z34|1|1|C|2693
7Z34|1|1|A|2694
7Z34|1|1|A|2695
7Z34|1|1|A|2696
7Z34|1|1|A|2697
7Z34|1|1|G|2698
7Z34|1|1|G|2699
7Z34|1|1|G|2700

Current chains

Chain 1

35S pre-ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein L21-A