HL_7Z34_072

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

7Z34|1|1|A|3243, 7Z34|1|1|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z34_072 not in the Motif Atlas

Homologous match to HL_8P9A_180

Geometric discrepancy: 0.2424

The information below is about HL_8P9A_180

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7Z34|1|1|C|3240
7Z34|1|1|G|3241
7Z34|1|1|G|3242
7Z34|1|1|A|3243
7Z34|1|1|A|3244
7Z34|1|1|A|3245
7Z34|1|1|G|3246
7Z34|1|1|G|3247

Current chains

Chain 1

35S pre-ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L16-A