HL_7Z34_081

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAGAAAGUG

Length

9 nucleotides

Bulged bases

7Z34|1|1|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z34_081 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1183

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

7Z34|1|1|C|2163
7Z34|1|1|A|2164
7Z34|1|1|G|2165
7Z34|1|1|A|2166
7Z34|1|1|A|2167
7Z34|1|1|A|2168
7Z34|1|1|G|2169
7Z34|1|1|U|2170
7Z34|1|1|G|2171

Current chains

Chain 1

35S pre-ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain N

60S ribosomal protein L15-A