HL_7Z3O_085

3D structure

PDB id

7Z3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAUUUAAAUCCCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z3O_085 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1544

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7Z3O|1|2|A|517
7Z3O|1|2|A|518
7Z3O|1|2|U|519
7Z3O|1|2|U|520
7Z3O|1|2|U|521
7Z3O|1|2|A|522
7Z3O|1|2|A|523
7Z3O|1|2|A|524
7Z3O|1|2|U|525
7Z3O|1|2|C|526
7Z3O|1|2|C|527
7Z3O|1|2|C|528
7Z3O|1|2|U|529

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SJ

40S ribosomal protein s9-like protein

Chain SY

40S ribosomal protein S24