7Z3O Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7Z3O_001 | 1/1/39:46 | No text annotation | geometric HL_5TBW_001 NA | |
| HL_7Z3O_002 | 1/1/70:75 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7Z3O_003 | 1/1/91:97 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_7Z3O_004 | 1/1/130:135 | UNCG | geometric HL_4LGT_001 HL_61337.3 | |
| HL_7Z3O_005 | 1/1/188:195 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7Z3O_006 | 1/1/202:206 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_7Z3O_007 | 1/1/210:218 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_7Z3O_008 | 1/1/271:280 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_7Z3O_009 | 1/1/296:305 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_7Z3O_010 | 1/1/350:355 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7Z3O_011 | 1/1/375:380 | GNRA | homologous HL_5TBW_011 NA | |
| HL_7Z3O_012 | 1/1/456:461 | No text annotation | geometric HL_5TBW_018 NA | |
| HL_7Z3O_013 | 1/1/534:539 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_7Z3O_014 | 1/1/589:593 | Mini UNCG | geometric HL_6MSF_001 HL_90436.3 | |
| HL_7Z3O_015 | 1/1/628:637 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_7Z3O_016 | 1/1/674:682 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_7Z3O_017 | 1/1/695:700 | GNRA | homologous HL_5TBW_016 NA | |
| HL_7Z3O_018 | 1/1/717:722 | UNCG | geometric HL_6JQ6_004 HL_61337.3 | |
| HL_7Z3O_019 | 1/1/745:750 | No text annotation | homologous HL_8C3A_018 NA | |
| HL_7Z3O_020 | 1/1/826:831 | GNRA | homologous HL_8C3A_019 NA | |
| HL_7Z3O_021 | 1/1/858:867 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_7Z3O_022 | 1/1/892:900 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_7Z3O_023 | 1/1/940:945 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_7Z3O_025 | 1/1/1059:1066 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_7Z3O_026 | 1/1/1109:1115 | GNRA | homologous HL_5TBW_025 NA | |
| HL_7Z3O_027 | 1/1/1131:1138 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_7Z3O_030 | 1/1/1330:1340 | Mini UNCG | geometric HL_4OOG_001 HL_12626.2 | |
| HL_7Z3O_031 | 1/1/1386:1391 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7Z3O_032 | 1/1/1445:1453 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_7Z3O_033 | 1/1/1489:1495 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_7Z3O_034 | 1/1/1527:1532 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_7Z3O_035 | 1/1/1547:1554 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_7Z3O_036 | 1/1/1579:1588 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_7Z3O_037 | 1/1/1614:1619 | GNRA | homologous HL_8C3A_036 NA | |
| HL_7Z3O_038 | 1/1/1660:1668 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_7Z3O_039 | 1/1/1699:1705 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_7Z3O_041 | 1/1/1772:1776 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_7Z3O_042 | 1/1/1824:1831 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_7Z3O_043 | 1/1/1842:1848 | GNRA | homologous HL_5TBW_042 NA | |
| HL_7Z3O_044 | 1/1/1903:1908 | UNCG | homologous HL_8C3A_043 NA | |
| HL_7Z3O_045 | 1/1/2073:2077 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_7Z3O_046 | 1/1/2098:2108 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_7Z3O_047 | 1/1/2127:2133 | GNRA | homologous HL_8C3A_047 NA | |
| HL_7Z3O_048 | 1/1/2183:2188 | GNRA | homologous HL_8C3A_048 NA | |
| HL_7Z3O_049 | 1/1/2216:2226 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_7Z3O_050 | 1/1/2255:2263 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_7Z3O_051 | 1/1/2332:2341 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_7Z3O_053 | 1/1/2527:2533 | No text annotation | geometric HL_5U3G_001 HL_75660.7 | |
| HL_7Z3O_054 | 1/1/2575:2583 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_7Z3O_117 | 1/1/2592:2604 | No text annotation | homologous HL_8P9A_166 HL_02042.1 | |
| HL_7Z3O_056 | 1/1/2632:2640 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_7Z3O_057 | 1/1/2652:2659 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_7Z3O_058 | 1/1/2683:2691 | No text annotation | homologous HL_5TBW_058 NA | |
| HL_7Z3O_059 | 1/1/2703:2708 | GNRA | homologous HL_8C3A_060 NA | |
| HL_7Z3O_060 | 1/1/2735:2743 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_7Z3O_061 | 1/1/2799:2807 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_7Z3O_062 | 1/1/2856:2863 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_7Z3O_119 | 1/1/2877:2887 | No text annotation | ||
| HL_7Z3O_063 | 1/1/2879:2885 | No text annotation | homologous HL_8C3A_064 NA | |
| HL_7Z3O_064 | 1/1/2922:2927 | GNRA | homologous HL_5TBW_064 NA | |
| HL_7Z3O_065 | 1/1/2983:2988 | GNRA | homologous HL_8C3A_066 NA | |
| HL_7Z3O_066 | 1/1/3026:3031 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7Z3O_067 | 1/1/3068:3082 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7Z3O_068 | 1/1/3143:3148 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_7Z3O_069 | 1/1/3182:3190 | No text annotation | geometric HL_3SKL_006 NA | |
| HL_7Z3O_070 | 1/1/3244:3252 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_7Z3O_071 | 1/1/3291:3294 | Mini UNCG | homologous HL_8C3A_072 NA | |
| HL_7Z3O_072 | 1/2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_7Z3O_073 | 1/2/70:80 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_7Z3O_074 | 1/2/150:158 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_7Z3O_120 | 1/2/183:194 | No text annotation | ||
| HL_7Z3O_077 | 1/2/240:247 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_7Z3O_079 | 1/2/327:335 | GNRA related | homologous HL_4V88_193 NA | |
| HL_7Z3O_080 | 1/2/365:370 | No text annotation | homologous HL_4V88_194 NA | |
| HL_7Z3O_081 | 1/2/390:401 | No text annotation | homologous HL_4V88_195 NA | |
| HL_7Z3O_082 | 1/2/411:416 | UNCG | homologous HL_4V88_196 NA | |
| HL_7Z3O_083 | 1/2/447:453 | No text annotation | homologous HL_4V88_197 NA | |
| HL_7Z3O_121 | 1/2/511:540 | No text annotation | ||
| HL_7Z3O_085 | 1/2/517:529 | No text annotation | geometric HL_4V88_199 NA | |
| HL_7Z3O_086 | 1/2/566:571 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_7Z3O_088 | 1/2/763:771 | No text annotation | homologous HL_4V88_203 NA | |
| HL_7Z3O_089 | 1/2/776:781 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 | |
| HL_7Z3O_091 | 1/2/898:907 | No text annotation | homologous HL_4V88_206 NA | |
| HL_7Z3O_092 | 1/2/935:940 | GNRA | homologous HL_4V88_207 NA | |
| HL_7Z3O_093 | 1/2/995:1005 | No text annotation | homologous HL_4V88_208 NA | |
| HL_7Z3O_094 | 1/2/1053:1061 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_7Z3O_095 | 1/2/1081:1086 | GNRA | homologous HL_4V88_210 NA | |
| HL_7Z3O_096 | 1/2/1118:1123 | GNRA | homologous HL_4V88_211 NA | |
| HL_7Z3O_097 | 1/2/1185:1194 | No text annotation | homologous HL_4V88_212 NA | |
| HL_7Z3O_099 | 1/2/1293:1298 | GNRA | homologous HL_4V88_214 NA | |
| HL_7Z3O_100 | 1/2/1306:1313 | No text annotation | homologous HL_4V88_215 NA | |
| HL_7Z3O_102 | 1/2/1393:1398 | GNRA | geometric HL_1U9S_004 HL_34789.4 | |
| HL_7Z3O_104 | 1/2/1546:1557 | No text annotation | homologous HL_4V88_219 NA | |
| HL_7Z3O_105 | 1/2/1590:1598 | No text annotation | homologous HL_4V88_220 NA | |
| HL_7Z3O_107 | 1/2/1774:1779 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_7Z3O_124 | 1/3/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_7Z3O_108 | 1/3/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_7Z3O_109 | 1/3/87:92 | GNRA | homologous HL_5TBW_186 NA | |
| HL_7Z3O_110 | 1/4/47:56 | Pseudoknot with intercalation | geometric HL_7A0S_001 HL_17803.1 | |
| HL_7Z3O_111 | 1/4/69:89 | No text annotation | homologous HL_8C3A_230 NA | |
| HL_7Z3O_112 | 1/4/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_7Z3O_113 | 1/4/124:129 | No text annotation | homologous HL_5TBW_076 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7Z3O_024 | No text annotation | ||
| HL_7Z3O_114 | tRNA anticodon loop | ||
| HL_7Z3O_028 | No text annotation | ||
| HL_7Z3O_029 | GNRA wlth tandem sheared | ||
| HL_7Z3O_115 | No text annotation | ||
| HL_7Z3O_116 | No text annotation | ||
| HL_7Z3O_040 | GNRA related | ||
| HL_7Z3O_052 | No text annotation | ||
| HL_7Z3O_055 | No text annotation | ||
| HL_7Z3O_118 | No text annotation | ||
| HL_7Z3O_075 | No text annotation | ||
| HL_7Z3O_076 | UNCG | ||
| HL_7Z3O_078 | Mini UNCG | ||
| HL_7Z3O_084 | No text annotation | ||
| HL_7Z3O_087 | tRNA D-loop | ||
| HL_7Z3O_090 | Pseudoknot geometry | ||
| HL_7Z3O_122 | GNRA with extra near cWW | ||
| HL_7Z3O_098 | No text annotation | ||
| HL_7Z3O_123 | Anticodon loop related | ||
| HL_7Z3O_101 | No text annotation | ||
| HL_7Z3O_103 | GNRA | ||
| HL_7Z3O_106 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7Z3O_001 | 1/1/8:9, 1/4/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_7Z3O_002 | 1/1/14:16, 1/4/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_7Z3O_003 | 1/1/28:29, 1/1/57:59 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7Z3O_004 | 1/1/32:39, 1/1/46:54 | tSH-tHW-tHH-tHS | homologous IL_5TBW_005 NA | |
| IL_7Z3O_005 | 1/1/83:90, 1/1/98:104 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_7Z3O_006 | 1/1/124:125, 1/1/140:145 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_7Z3O_007 | 1/1/126:128, 1/1/137:139 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_7Z3O_008 | 1/1/155:156, 1/1/253:255 | Minor groove platform | geometric IL_6DLR_003 IL_34520.3 | |
| IL_7Z3O_009 | 1/1/158:160, 1/1/250:251 | Single stack bend | homologous IL_5TBW_009 NA | |
| IL_7Z3O_240 | 1/1/164:165, 1/1/241:246 | No text annotation | ||
| IL_7Z3O_011 | 1/1/168:171, 1/1/235:238 | Double sheared | geometric IL_4WF9_087 IL_58355.2 | |
| IL_7Z3O_012 | 1/1/174:175, 1/1/230:232 | Single stack bend | homologous IL_8C3A_012 NA | |
| IL_7Z3O_013 | 1/1/176:179, 1/1/226:229 | Tandem non-canonical cWW pairs | geometric IL_3R2D_002 IL_71194.2 | |
| IL_7Z3O_014 | 1/1/183:185, 1/1/198:199 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7Z3O_015 | 1/1/330:332, 1/4/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_7Z3O_016 | 1/1/369:372, 1/1/383:396 | No text annotation | geometric IL_4WF9_015 IL_44923.1 | |
| IL_7Z3O_017 | 1/1/397:403, 1/4/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_7Z3O_018 | 1/1/421:423, 1/1/617:619 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_7Z3O_019 | 1/1/435:437, 1/1/481:483 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_01003.3 | |
| IL_7Z3O_020 | 1/1/445:447, 1/1/470:473 | Isolated non-canonical cWW pair | geometric IL_8C3A_468 NA | |
| IL_7Z3O_279 | 1/1/446:451, 1/1/466:472 | No text annotation | ||
| IL_7Z3O_021 | 1/1/447:451, 1/1/466:470 | No text annotation | ||
| IL_7Z3O_022 | 1/1/508:516, 1/1/558:565 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_7Z3O_023 | 1/1/523:530, 1/1/543:551 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_7Z3O_024 | 1/1/658:660, 1/1/772:774 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_7Z3O_025 | 1/1/668:672, 1/1/684:688 | No text annotation | homologous IL_8C3A_024 NA | |
| IL_7Z3O_026 | 1/1/713:716, 1/1/723:727 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_7Z3O_027 | 1/1/734:735, 1/1/761:763 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_7Z3O_028 | 1/1/737:738, 1/1/757:759 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_7Z3O_029 | 1/1/740:745, 1/1/750:755 | No text annotation | geometric IL_5TBW_026 NA | |
| IL_7Z3O_030 | 1/1/785:787, 1/1/920:922 | Isolated non-canonical cWW pair | geometric IL_5TBW_027 NA | |
| IL_7Z3O_031 | 1/1/787:791, 1/1/913:920 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_7Z3O_032 | 1/1/815:816, 1/1/841:843 | Single bulged G | geometric IL_4V9F_026 IL_28408.2 | |
| IL_7Z3O_033 | 1/1/816:820, 1/1/837:841 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_7Z3O_034 | 1/1/851:854, 1/1/870:872 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_7Z3O_035 | 1/1/855:857, 1/1/868:869 | Single bulged U | homologous IL_5TBW_032 NA | |
| IL_7Z3O_036 | 1/1/889:891, 1/1/901:905 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_7Z3O_037 | 1/1/936:938, 1/1/947:949 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_7Z3O_038 | 1/1/951:952, 1/1/1094:1096 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_7Z3O_039 | 1/1/958:964, 1/1/1084:1088 | No text annotation | ||
| IL_7Z3O_040 | 1/1/965:967, 1/1/1082:1083 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_7Z3O_041 | 1/1/973:979, 1/1/1035:1041 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5TBW_038 NA | |
| IL_7Z3O_242 | 1/1/973:980, 1/1/1033:1041 | No text annotation | ||
| IL_7Z3O_042 | 1/1/979:980, 1/1/1033:1035 | Minor groove platform | homologous IL_5TBW_039 NA | |
| IL_7Z3O_043 | 1/1/981:986, 1/1/1029:1032 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_7Z3O_244 | 1/1/988:991, 1/1/1024:1027 | No text annotation | homologous IL_8C3A_481 NA | |
| IL_7Z3O_045 | 1/1/991:993, 1/1/1022:1024 | Isolated non-canonical cWW pair | geometric IL_5TBW_127 NA | |
| IL_7Z3O_046 | 1/1/995:999, 1/1/1018:1020 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_7Z3O_047 | 1/1/1052:1054, 1/1/1070:1072 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_7Z3O_048 | 1/1/1057:1059, 1/1/1066:1067 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_7Z3O_049 | 1/1/1103:1105, 1/1/1119:1121 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_7Z3O_050 | 1/1/1150:1154, 1/1/1311:1315 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_7Z3O_051 | 1/1/1156:1163, 1/1/1308:1309 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_7Z3O_052 | 1/1/1163:1165, 1/1/1307:1308 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_7Z3O_053 | 1/1/1170:1177, 1/1/1297:1302 | No text annotation | homologous IL_5TBW_051 NA | |
| IL_7Z3O_054 | 1/1/1177:1188, 1/1/1282:1297 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_7Z3O_055 | 1/1/1190:1192, 1/1/1279:1280 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_7Z3O_056 | 1/1/1201:1209, 1/1/1266:1270 | Kink-turn | homologous IL_5TBW_054 NA | |
| IL_7Z3O_059 | 1/1/1359:1361, 1/1/1411:1414 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_7Z3O_060 | 1/1/1368:1370, 1/1/1403:1404 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_7Z3O_061 | 1/1/1371:1378, 1/1/1398:1402 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_7Z3O_062 | 1/1/1381:1383, 1/1/1394:1395 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_7Z3O_063 | 1/1/1427:1433, 1/1/2317:2322 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_7Z3O_064 | 1/1/1475:1478, 1/1/1815:1816 | Major groove platform; stack outside cWW | geometric IL_7A0S_046 IL_74641.2 | |
| IL_7Z3O_065 | 1/1/1484:1488, 1/1/1496:1498 | Minor groove platform | geometric IL_4LFB_037 IL_61370.1 | |
| IL_7Z3O_066 | 1/1/1515:1519, 1/1/1565:1570 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_7Z3O_067 | 1/1/1598:1601, 1/1/1804:1806 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_7Z3O_068 | 1/1/1603:1604, 1/1/1800:1802 | Single bulged U | geometric IL_2A64_002 IL_97561.3 | |
| IL_7Z3O_069 | 1/1/1604:1605, 1/1/1798:1800 | Single bulged U | geometric IL_6UFG_004 IL_97561.3 | |
| IL_7Z3O_070 | 1/1/1607:1611, 1/1/1791:1796 | No text annotation | geometric IL_5TBW_066 NA | |
| IL_7Z3O_071 | 1/1/1625:1629, 1/1/1786:1790 | Triple sheared | geometric IL_5TBW_067 NA | |
| IL_7Z3O_280 | 1/1/1634:1638, 1/1/1771:1781 | No text annotation | ||
| IL_7Z3O_072 | 1/1/1641:1643, 1/1/1766:1768 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_7Z3O_073 | 1/1/1649:1650, 1/1/1758:1760 | Single bulged C | homologous IL_8C3A_075 NA | |
| IL_7Z3O_248 | 1/1/1649:1651, 1/1/1756:1760 | No text annotation | geometric IL_8C3A_070 NA | |
| IL_7Z3O_074 | 1/1/1650:1651, 1/1/1756:1758 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_7Z3O_075 | 1/1/1655:1657, 1/1/1671:1673 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_7Z3O_076 | 1/1/1674:1678, 1/1/1727:1732 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_7Z3O_077 | 1/1/1682:1687, 1/1/1717:1723 | No text annotation | ||
| IL_7Z3O_078 | 1/1/1691:1697, 1/1/1707:1713 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_7Z3O_079 | 1/1/1863:1869, 1/1/2309:2312 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_7Z3O_080 | 1/1/1875:1877, 1/1/2301:2303 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_7Z3O_081 | 1/1/1878:1881, 1/1/2299:2300 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_7Z3O_249 | 1/1/1878:1886, 1/1/2296:2300 | No text annotation | homologous IL_8P9A_305 IL_80252.1 | |
| IL_7Z3O_082 | 1/1/1881:1886, 1/1/2296:2299 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_7Z3O_083 | 1/1/1898:1903, 1/1/1908:1914 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_7Z3O_084 | 1/1/1920:1922, 1/1/2069:2071 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_7Z3O_085 | 1/1/1927:1928, 1/1/2061:2064 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_7Z3O_086 | 1/1/1932:1934, 1/1/2050:2057 | No text annotation | ||
| IL_7Z3O_087 | 1/1/2091:2092, 1/1/2286:2288 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_7Z3O_088 | 1/1/2119:2124, 1/1/2136:2143 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_7Z3O_089 | 1/1/2159:2162, 1/1/2208:2209 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_7Z3O_090 | 1/1/2163:2164, 1/1/2204:2207 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_7Z3O_091 | 1/1/2167:2169, 1/1/2200:2201 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_7Z3O_092 | 1/1/2169:2173, 1/1/2198:2200 | Other IL | geometric IL_7A0S_092 IL_10892.2 | |
| IL_7Z3O_093 | 1/1/2174:2180, 1/1/2191:2197 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_7Z3O_094 | 1/1/2239:2240, 1/1/2270:2273 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_7Z3O_095 | 1/1/2240:2251, 1/1/2267:2270 | No text annotation | homologous IL_5TBW_090 NA | |
| IL_7Z3O_096 | 1/1/2354:2357, 1/1/2945:2947 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_7Z3O_097 | 1/1/2359:2361, 1/1/2940:2943 | Major groove platform with intercalation | homologous IL_5TBW_092 NA | |
| IL_7Z3O_098 | 1/1/2372:2374, 1/1/2770:2771 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_7Z3O_252 | 1/1/2372:2376, 1/1/2766:2771 | No text annotation | ||
| IL_7Z3O_099 | 1/1/2375:2376, 1/1/2766:2769 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_7Z3O_100 | 1/1/2386:2388, 1/1/2563:2566 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_7Z3O_102 | 1/1/2483:2489, 1/1/2543:2546 | No text annotation | homologous IL_5TBW_096 NA | |
| IL_7Z3O_103 | 1/1/2573:2574, 1/1/2584:2586 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_7Z3O_104 | 1/1/2625:2627, 1/1/2645:2649 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_7Z3O_105 | 1/1/2673:2675, 1/1/2699:2700 | Single bulged A | geometric IL_5TBW_013 NA | |
| IL_7Z3O_106 | 1/1/2677:2680, 1/1/2694:2697 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_7Z3O_281 | 1/1/2729:2732, 1/1/2746:2747 | No text annotation | homologous IL_8CRE_110 NA | |
| IL_7Z3O_108 | 1/1/2782:2783, 1/1/2824:2826 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_7Z3O_255 | 1/1/2782:2787, 1/1/2821:2826 | No text annotation | ||
| IL_7Z3O_109 | 1/1/2783:2785, 1/1/2822:2824 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_7Z3O_110 | 1/1/2785:2787, 1/1/2821:2822 | Major groove platform | homologous IL_8C3A_112 NA | |
| IL_7Z3O_111 | 1/1/2787:2789, 1/1/2817:2821 | Major groove minor groove platform with extra cWW | geometric IL_5TBW_105 NA | |
| IL_7Z3O_112 | 1/1/2794:2798, 1/1/2808:2812 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_7Z3O_113 | 1/1/2835:2836, 1/1/2908:2910 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_7Z3O_114 | 1/1/2838:2840, 1/1/2902:2906 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_7Z3O_115 | 1/1/2840:2841, 1/1/2899:2902 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_7Z3O_116 | 1/1/2848:2850, 1/1/2871:2873 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
| IL_7Z3O_117 | 1/1/2850:2851, 1/1/2868:2871 | Major groove platform with intercalation | homologous IL_8C3A_119 NA | |
| IL_7Z3O_118 | 1/1/2877:2879, 1/1/2885:2887 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_7Z3O_119 | 1/1/2919:2920, 1/1/2929:2931 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_7Z3O_120 | 1/1/2962:2965, 1/1/3097:3102 | Double sheared | homologous IL_5TBW_114 NA | |
| IL_7Z3O_121 | 1/1/2970:2972, 1/1/2998:3000 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_7Z3O_122 | 1/1/2976:2983, 1/1/2988:2994 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_7Z3O_123 | 1/1/3005:3009, 1/1/3049:3052 | Major groove minor groove platform with tHH | homologous IL_5TBW_117 NA | |
| IL_7Z3O_124 | 1/1/3012:3017, 1/1/3042:3046 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_7Z3O_125 | 1/1/3021:3022, 1/1/3035:3038 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_7Z3O_126 | 1/1/3061:3065, 1/1/3085:3089 | UAA/GAN | homologous IL_5TBW_120 NA | |
| IL_7Z3O_127 | 1/1/3118:3120, 1/1/3225:3227 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_7Z3O_282 | 1/1/3118:3123, 1/1/3223:3227 | No text annotation | ||
| IL_7Z3O_128 | 1/1/3121:3123, 1/1/3223:3224 | Minor groove platform | geometric IL_5TBW_039 NA | |
| IL_7Z3O_129 | 1/1/3130:3132, 1/1/3156:3157 | Single bulged U | geometric IL_3D2V_001 IL_97561.3 | |
| IL_7Z3O_130 | 1/1/3133:3141, 1/1/3150:3155 | No text annotation | ||
| IL_7Z3O_131 | 1/1/3168:3174, 1/1/3198:3203 | No text annotation | ||
| IL_7Z3O_132 | 1/1/3176:3178, 1/1/3194:3196 | Isolated non-canonical cWW pair | homologous IL_5TBW_127 NA | |
| IL_7Z3O_133 | 1/1/3241:3244, 1/1/3252:3255 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_7Z3O_134 | 1/1/3259:3261, 1/1/3329:3330 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_7Z3O_135 | 1/1/3265:3266, 1/1/3322:3325 | Single bulged U | homologous IL_8C3A_137 NA | |
| IL_7Z3O_136 | 1/1/3269:3271, 1/1/3314:3319 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_7Z3O_137 | 1/1/3273:3278, 1/1/3308:3312 | No text annotation | homologous IL_5TBW_133 NA | |
| IL_7Z3O_138 | 1/1/3281:3283, 1/1/3304:3305 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_7Z3O_139 | 1/1/3283:3286, 1/1/3301:3304 | Double sheared | geometric IL_4V9F_100 IL_58355.2 | |
| IL_7Z3O_140 | 1/1/3290:3291, 1/1/3294:3297 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_7Z3O_141 | 1/2/24:26, 1/2/597:598 | Single bulged C | homologous IL_4V88_384 NA | |
| IL_7Z3O_142 | 1/2/35:37, 1/2/468:470 | Isolated non-canonical cWW pair | geometric IL_5TBW_115 NA | |
| IL_7Z3O_143 | 1/2/37:41, 1/2/463:468 | Triple sheared related | homologous IL_4V88_386 NA | |
| IL_7Z3O_144 | 1/2/42:48, 1/2/428:430 | No text annotation | homologous IL_4V88_387 NA | |
| IL_7Z3O_145 | 1/2/50:52, 1/2/425:426 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_7Z3O_146 | 1/2/58:63, 1/2/86:88 | No text annotation | homologous IL_4V88_389 NA | |
| IL_7Z3O_147 | 1/2/64:69, 1/2/81:85 | No text annotation | homologous IL_4V88_390 NA | |
| IL_7Z3O_148 | 1/2/108:111, 1/2/299:302 | Tandem non-canonical cWW pairs | geometric IL_4V88_391 NA | |
| IL_7Z3O_261 | 1/2/112:115, 1/2/297:298 | Multiple bulged bases | homologous IL_8C3A_400 NA | |
| IL_7Z3O_150 | 1/2/116:121, 1/2/292:296 | No text annotation | homologous IL_4V88_393 NA | |
| IL_7Z3O_151 | 1/2/140:146, 1/2/162:169 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_7Z3O_152 | 1/2/146:149, 1/2/159:162 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_7Z3O_153 | 1/2/183:186, 1/2/191:194 | Double sheared | geometric IL_4KZD_002 IL_58355.2 | |
| IL_7Z3O_154 | 1/2/199:201, 1/2/256:260 | Isolated non-canonical cWW pair | geometric IL_5B2P_002 IL_71625.3 | |
| IL_7Z3O_262 | 1/2/199:203, 1/2/254:260 | No text annotation | ||
| IL_7Z3O_155 | 1/2/201:203, 1/2/254:256 | Isolated non-canonical cWW pair | geometric IL_5AY2_001 IL_01003.3 | |
| IL_7Z3O_156 | 1/2/262:264, 1/2/285:286 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_7Z3O_157 | 1/2/267:270, 1/2/280:282 | No text annotation | homologous IL_4V88_400 NA | |
| IL_7Z3O_158 | 1/2/272:273, 1/2/276:278 | Single bulged C | geometric IL_3SN2_002 IL_05642.2 | |
| IL_7Z3O_263 | 1/2/308:313, 1/2/345:352 | Kink-turn with non-sequential stacking | homologous IL_8C3A_410 NA | |
| IL_7Z3O_160 | 1/2/315:320, 1/2/342:343 | No text annotation | homologous IL_4V88_403 NA | |
| IL_7Z3O_161 | 1/2/360:362, 1/2/373:378 | No text annotation | homologous IL_4V88_404 NA | |
| IL_7Z3O_162 | 1/2/386:388, 1/2/403:405 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_7Z3O_163 | 1/2/408:410, 1/2/417:419 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_7Z3O_164 | 1/2/436:438, 1/2/460:461 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_7Z3O_165 | 1/2/440:445, 1/2/455:458 | C-loop with extra cWW pair | homologous IL_4V88_408 NA | |
| IL_7Z3O_167 | 1/2/511:513, 1/2/533:540 | Isolated tHS basepair with bulges | geometric IL_7RQB_082 NA | |
| IL_7Z3O_168 | 1/2/513:515, 1/2/530:533 | Minor groove platform with extra cWW | geometric IL_4V88_411 NA | |
| IL_7Z3O_169 | 1/2/515:517, 1/2/529:530 | Minor groove platform | homologous IL_4V88_412 NA | |
| IL_7Z3O_170 | 1/2/547:554, 1/2/584:585 | SSU/LSU pseudoknot | homologous IL_4V88_413 NA | |
| IL_7Z3O_171 | 1/2/554:556, 1/2/583:584 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_7Z3O_172 | 1/2/559:565, 1/2/572:580 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_7Z3O_173 | 1/2/613:619, 1/2/1101:1102 | No text annotation | homologous IL_4V88_416 NA | |
| IL_7Z3O_174 | 1/2/621:623, 1/2/971:973 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_7Z3O_175 | 1/2/624:628, 1/2/966:970 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_7Z3O_284 | 1/2/745:746, 1/2/800:803 | No text annotation | homologous IL_8CRE_428 IL_73108.2 | |
| IL_7Z3O_180 | 1/2/747:749, 1/2/797:799 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_7Z3O_181 | 1/2/750:758, 1/2/789:796 | No text annotation | homologous IL_4V88_425 NA | |
| IL_7Z3O_182 | 1/2/817:819, 1/2/849:850 | Single bulged U | geometric IL_4V88_407 NA | |
| IL_7Z3O_183 | 1/2/863:864, 1/2/960:963 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_7Z3O_268 | 1/2/866:867, 1/2/956:958 | Single bulged U | geometric IL_6UFH_004 IL_97561.3 | |
| IL_7Z3O_269 | 1/2/869:871, 1/2/952:954 | Isolated non-canonical cWW pair | geometric IL_8C3A_074 NA | |
| IL_7Z3O_186 | 1/2/872:876, 1/2/948:951 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_7Z3O_187 | 1/2/883:886, 1/2/922:925 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_7Z3O_188 | 1/2/891:897, 1/2/908:917 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_7Z3O_189 | 1/2/983:988, 1/2/1012:1014 | Other IL | geometric IL_4V88_435 NA | |
| IL_7Z3O_190 | 1/2/988:992, 1/2/1008:1012 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_7Z3O_191 | 1/2/1032:1034, 1/2/1092:1098 | No text annotation | homologous IL_8P9A_425 IL_82706.2 | |
| IL_7Z3O_192 | 1/2/1039:1042, 1/2/1071:1074 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_7Z3O_193 | 1/2/1049:1051, 1/2/1063:1064 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_7Z3O_194 | 1/2/1108:1115, 1/2/1126:1131 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_7Z3O_195 | 1/2/1143:1144, 1/2/1626:1628 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_7Z3O_196 | 1/2/1146:1148, 1/2/1623:1624 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_7Z3O_197 | 1/2/1154:1157, 1/2/1613:1617 | C-loop | homologous IL_4V88_443 NA | |
| IL_7Z3O_198 | 1/2/1170:1172, 1/2/1460:1462 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_7Z3O_199 | 1/2/1175:1176, 1/2/1455:1457 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_7Z3O_200 | 1/2/1210:1213, 1/2/1444:1446 | No text annotation | geometric IL_4N0T_004 IL_32983.2 | |
| IL_7Z3O_203 | 1/2/1265:1267, 1/2/1436:1437 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_7Z3O_204 | 1/2/1269:1273, 1/2/1432:1434 | Isolated cWS basepair | homologous IL_4V88_450 NA | |
| IL_7Z3O_271 | 1/2/1269:1275, 1/2/1426:1434 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_7Z3O_205 | 1/2/1273:1275, 1/2/1426:1432 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_7Z3O_206 | 1/2/1277:1278, 1/2/1422:1424 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_7Z3O_207 | 1/2/1287:1289, 1/2/1320:1322 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_7Z3O_208 | 1/2/1303:1305, 1/2/1314:1315 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_7Z3O_209 | 1/2/1336:1339, 1/2/1380:1382 | Isolated non-canonical cWW pair | homologous IL_4V88_455 NA | |
| IL_7Z3O_210 | 1/2/1342:1345, 1/2/1374:1377 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_7Z3O_272 | 1/2/1386:1388, 1/2/1403:1408 | No text annotation | geometric IL_8C3A_465 NA | |
| IL_7Z3O_285 | 1/2/1476:1483, 1/2/1515:1523 | No text annotation | homologous IL_8CRE_462 IL_91698.1 | |
| IL_7Z3O_213 | 1/2/1484:1490, 1/2/1509:1514 | No text annotation | homologous IL_8P9A_449 IL_22564.1 | |
| IL_7Z3O_286 | 1/2/1492:1494, 1/2/1505:1507 | Isolated non-canonical cWW pair | homologous IL_8CRE_464 IL_71625.3 | |
| IL_7Z3O_215 | 1/2/1536:1541, 1/2/1562:1567 | No text annotation | homologous IL_4V88_462 NA | |
| IL_7Z3O_216 | 1/2/1632:1634, 1/2/1760:1763 | No text annotation | geometric IL_5J7L_058 NA | |
| IL_7Z3O_217 | 1/2/1634:1637, 1/2/1756:1760 | No text annotation | homologous IL_4V88_464 NA | |
| IL_7Z3O_218 | 1/2/1638:1640, 1/2/1753:1755 | Isolated non-canonical cWW pair | geometric IL_5MWI_007 NA | |
| IL_7Z3O_219 | 1/2/1640:1643, 1/2/1749:1753 | No text annotation | geometric IL_1CSL_001 IL_59580.1 | |
| IL_7Z3O_220 | 1/2/1646:1648, 1/2/1744:1746 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_7Z3O_221 | 1/2/1649:1652, 1/2/1740:1743 | Double sheared | geometric IL_4V88_468 NA | |
| IL_7Z3O_222 | 1/2/1652:1654, 1/2/1739:1740 | Single bulged U | homologous IL_4V88_469 NA | |
| IL_7Z3O_223 | 1/2/1661:1663, 1/2/1730:1732 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_7Z3O_224 | 1/2/1665:1668, 1/2/1725:1728 | Double sheared | homologous IL_4V88_471 NA | |
| IL_7Z3O_225 | 1/2/1669:1671, 1/2/1722:1724 | Isolated non-canonical cWW pair | geometric IL_7A0S_014 IL_01003.3 | |
| IL_7Z3O_276 | 1/2/1669:1674, 1/2/1719:1724 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
| IL_7Z3O_226 | 1/2/1671:1674, 1/2/1719:1722 | Tandem non-canonical cWW pairs | homologous IL_4V88_473 NA | |
| IL_7Z3O_227 | 1/2/1674:1678, 1/2/1715:1719 | Triple sheared | geometric IL_4V88_474 NA | |
| IL_7Z3O_230 | 1/3/15:16, 1/3/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_7Z3O_287 | 1/3/21:27, 1/3/53:58 | No text annotation | homologous IL_8OI5_135 IL_41504.1 | |
| IL_7Z3O_232 | 1/3/28:29, 1/3/48:52 | No text annotation | ||
| IL_7Z3O_233 | 1/3/32:36, 1/3/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_7Z3O_234 | 1/3/72:79, 1/3/99:105 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_7Z3O_235 | 1/3/83:86, 1/3/93:95 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_7Z3O_236 | 1/4/64:66, 1/4/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_7Z3O_237 | 1/4/68:69, 1/4/89:91 | Single bulged U | geometric IL_5TBW_146 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7Z3O_238 | Isolated non-canonical cWW pair | ||
| IL_7Z3O_239 | No text annotation | ||
| IL_7Z3O_010 | No text annotation | ||
| IL_7Z3O_241 | No text annotation | ||
| IL_7Z3O_243 | No text annotation | ||
| IL_7Z3O_044 | No text annotation | ||
| IL_7Z3O_245 | No text annotation | ||
| IL_7Z3O_057 | No text annotation | ||
| IL_7Z3O_058 | Isolated non-canonical cWW pair | ||
| IL_7Z3O_246 | No text annotation | ||
| IL_7Z3O_247 | No text annotation | ||
| IL_7Z3O_250 | Tandem non-canonical cWW pairs | ||
| IL_7Z3O_251 | Isolated non-canonical cWW pair | ||
| IL_7Z3O_101 | No text annotation | ||
| IL_7Z3O_253 | Isolated non-canonical cWW pair | ||
| IL_7Z3O_254 | No text annotation | ||
| IL_7Z3O_107 | No text annotation | ||
| IL_7Z3O_256 | No text annotation | ||
| IL_7Z3O_257 | No text annotation | ||
| IL_7Z3O_258 | Double sheared with non-canonical cWW | ||
| IL_7Z3O_259 | No text annotation | ||
| IL_7Z3O_260 | No text annotation | ||
| IL_7Z3O_149 | Isolated non-canonical cWW with bulges | ||
| IL_7Z3O_159 | No text annotation | ||
| IL_7Z3O_166 | Isolated non-canonical cWW pair | ||
| IL_7Z3O_283 | Single bulged A | ||
| IL_7Z3O_264 | Isolated non-canonical cWW pair | ||
| IL_7Z3O_176 | Single bulged U | ||
| IL_7Z3O_177 | No text annotation | ||
| IL_7Z3O_178 | No text annotation | ||
| IL_7Z3O_265 | No text annotation | ||
| IL_7Z3O_179 | No text annotation | ||
| IL_7Z3O_266 | No text annotation | ||
| IL_7Z3O_267 | Isolated non-canonical cWW pair | ||
| IL_7Z3O_184 | Tandem non-canonical cWW pairs | ||
| IL_7Z3O_185 | Tandem non-canonical cWW pairs | ||
| IL_7Z3O_270 | C-loop with extra cWW pair | ||
| IL_7Z3O_201 | Kink-turn | ||
| IL_7Z3O_202 | No text annotation | ||
| IL_7Z3O_211 | Multiple bulged bases | ||
| IL_7Z3O_212 | No text annotation | ||
| IL_7Z3O_273 | No text annotation | ||
| IL_7Z3O_214 | Partly complementary | ||
| IL_7Z3O_274 | Tandem non-canonical cWW pairs | ||
| IL_7Z3O_275 | No text annotation | ||
| IL_7Z3O_228 | No text annotation | ||
| IL_7Z3O_277 | Tandem non-canonical cWW pairs | ||
| IL_7Z3O_229 | No text annotation | ||
| IL_7Z3O_231 | No text annotation | ||
| IL_7Z3O_278 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7Z3O_001 | 1/1/114:124, 1/1/145:154, 1/1/256:260 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_7Z3O_029 | 1/1/114:125, 1/1/140:154, 1/1/256:260 | No text annotation | ||
| J3_7Z3O_030 | 1/1/180:183, 1/1/199:208, 1/1/220:225 | No text annotation | ||
| J3_7Z3O_031 | 1/1/333:349, 1/1/356:361, 1/4/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_7Z3O_002 | 1/1/362:369, 1/1/396:397, 1/4/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_7Z3O_032 | 1/1/362:372, 1/1/383:403, 1/4/13:20 | No text annotation | ||
| J3_7Z3O_033 | 1/1/428:434, 1/1/484:486, 1/1/606:612 | No text annotation | ||
| J3_7Z3O_003 | 1/1/493:494, 1/1/579:588, 1/1/594:599 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_7Z3O_004 | 1/1/796:802, 1/1/887:889, 1/1/905:908 | No text annotation | homologous J3_5TBW_004 NA | |
| J3_7Z3O_036 | 1/1/810:813, 1/1/845:849, 1/1/874:879 | No text annotation | homologous J3_8P9A_050 J3_21998.1 | |
| J3_7Z3O_037 | 1/1/968:969, 1/1/1045:1049, 1/1/1075:1081 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_7Z3O_007 | 1/1/1462:1468, 1/1/1837:1839, 1/1/1851:1854 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_7Z3O_008 | 1/1/1471:1474, 1/1/1817:1823, 1/1/1832:1834 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_7Z3O_038 | 1/1/1509:1514, 1/1/1571:1575, 1/1/1592:1593 | No text annotation | homologous J3_8P9A_055 J3_94309.1 | |
| J3_7Z3O_039 | 1/1/1521:1525, 1/1/1534:1543, 1/1/1558:1563 | No text annotation | ||
| J3_7Z3O_040 | 1/1/1607:1612, 1/1/1621:1625, 1/1/1790:1796 | No text annotation | ||
| J3_7Z3O_009 | 1/1/1611:1612, 1/1/1621:1625, 1/1/1790:1791 | No text annotation | geometric J3_8C3A_054 NA | |
| J3_7Z3O_057 | 1/1/2395:2398, 1/1/2475:2479, 1/1/2550:2556 | No text annotation | geometric J3_4V9F_007 J3_86017.1 | |
| J3_7Z3O_011 | 1/1/2492:2495, 1/1/2508:2523, 1/1/2537:2540 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_7Z3O_042 | 1/1/2610:2612, 1/1/2713:2724, 1/1/2752:2757 | No text annotation | homologous J3_8P9A_061 J3_04772.1 | |
| J3_7Z3O_043 | 1/1/2621:2625, 1/1/2649:2651, 1/1/2660:2667 | No text annotation | ||
| J3_7Z3O_012 | 1/1/2623:2625, 1/1/2649:2651, 1/1/2660:2665 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_7Z3O_013 | 1/1/2845:2848, 1/1/2873:2875, 1/1/2889:2895 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_7Z3O_045 | 1/1/3125:3130, 1/1/3157:3165, 1/1/3206:3221 | No text annotation | ||
| J3_7Z3O_014 | 1/1/3239:3240, 1/1/3256:3259, 1/1/3330:3333 | No text annotation | ||
| J3_7Z3O_015 | 1/2/41:42, 1/2/430:436, 1/2/461:463 | No text annotation | geometric J3_4V88_078 NA | |
| J3_7Z3O_046 | 1/2/41:48, 1/2/428:436, 1/2/461:463 | No text annotation | homologous J3_8C3A_083 NA | |
| J3_7Z3O_058 | 1/2/208:223, 1/2/234:240, 1/2/247:249 | No text annotation | ||
| J3_7Z3O_016 | 1/2/630:632, 1/2/859:863, 1/2/963:964 | No text annotation | geometric J3_4V88_080 NA | |
| J3_7Z3O_059 | 1/2/630:632, 1/2/859:864, 1/2/960:964 | No text annotation | homologous J3_8P9A_072 J3_17385.5 | |
| J3_7Z3O_017 | 1/2/759:762, 1/2/772:774, 1/2/783:788 | No text annotation | homologous J3_4V88_032 NA | |
| J3_7Z3O_018 | 1/2/879:882, 1/2/926:934, 1/2/941:945 | No text annotation | homologous J3_4V88_033 NA | |
| J3_7Z3O_019 | 1/2/1035:1037, 1/2/1076:1080, 1/2/1087:1091 | No text annotation | homologous J3_4V88_034 NA | |
| J3_7Z3O_060 | 1/2/1158:1161, 1/2/1577:1583, 1/2/1605:1612 | No text annotation | homologous J3_8CRE_078 J3_85722.1 | |
| J3_7Z3O_020 | 1/2/1165:1168, 1/2/1464:1466, 1/2/1570:1573 | No text annotation | homologous J3_4V88_036 NA | |
| J3_7Z3O_051 | 1/2/1177:1184, 1/2/1195:1206, 1/2/1450:1454 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_7Z3O_052 | 1/2/1213:1217, 1/2/1260:1264, 1/2/1438:1444 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_7Z3O_023 | 1/2/1280:1285, 1/2/1324:1329, 1/2/1415:1420 | No text annotation | geometric J3_4V88_039 NA | |
| J3_7Z3O_054 | 1/2/1290:1291, 1/2/1300:1303, 1/2/1315:1319 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_7Z3O_025 | 1/2/1333:1335, 1/2/1383:1386, 1/2/1408:1411 | No text annotation | homologous J3_4V88_040 NA | |
| J3_7Z3O_055 | 1/2/1333:1335, 1/2/1383:1388, 1/2/1403:1411 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_7Z3O_026 | 1/2/1466:1470, 1/2/1529:1536, 1/2/1567:1570 | No text annotation | homologous J3_4V88_041 NA | |
| J3_7Z3O_056 | 1/3/9:14, 1/3/66:67, 1/3/110:111 | No text annotation | homologous J3_8C3A_059 NA | |
| J3_7Z3O_028 | 1/4/44:45, 1/4/58:64, 1/4/96:100 | No text annotation | homologous J3_8C3A_060 NA | |
| J4_7Z3O_001 | 1/1/113:114, 1/1/260:265, 1/1/286:292, 1/1/309:312 | No text annotation | homologous J4_8C3A_001 NA | |
| J4_7Z3O_002 | 1/1/180:183, 1/1/199:202, 1/1/206:208, 1/1/220:225 | No text annotation | ||
| J4_7Z3O_003 | 1/1/1434:1440, 1/1/1458:1459, 1/1/1857:1860, 1/1/2315:2316 | No text annotation | homologous J4_8P9A_014 J4_34212.1 | |
| J4_7Z3O_004 | 1/1/1475:1479, 1/1/1503:1508, 1/1/1594:1595, 1/1/1809:1816 | No text annotation | ||
| J4_7Z3O_005 | 1/1/1478:1479, 1/1/1503:1508, 1/1/1594:1595, 1/1/1809:1815 | No text annotation | ||
| J4_7Z3O_006 | 1/1/1654:1657, 1/1/1671:1674, 1/1/1732:1733, 1/1/1752:1753 | No text annotation | ||
| J4_7Z3O_007 | 1/1/2093:2097, 1/1/2109:2113, 1/1/2149:2153, 1/1/2280:2285 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_7Z3O_008 | 1/1/2155:2157, 1/1/2211:2212, 1/1/2230:2239, 1/1/2273:2278 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_7Z3O_009 | 1/1/2613:2617, 1/1/2671:2673, 1/1/2700:2701, 1/1/2710:2712 | No text annotation | ||
| J4_7Z3O_010 | 1/1/2967:2970, 1/1/3000:3001, 1/1/3056:3058, 1/1/3092:3095 | No text annotation | ||
| J4_7Z3O_011 | 1/2/98:106, 1/2/304:306, 1/2/354:358, 1/2/380:381 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_7Z3O_012 | 1/2/619:621, 1/2/973:978, 1/2/1019:1030, 1/2/1100:1101 | No text annotation | homologous J4_8P9A_022 J4_14595.1 | |
| J4_7Z3O_013 | 1/2/1165:1168, 1/2/1464:1470, 1/2/1529:1536, 1/2/1567:1573 | No text annotation | ||
| J5_7Z3O_001 | 1/1/21:23, 1/4/35:42, 1/4/102:107, 1/4/115:116, 1/4/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_7Z3O_002 | 1/1/646:651, 1/1/781:784, 1/1/923:927, 1/1/1357:1359, 1/1/1414:1420 | No text annotation | ||
| J5_7Z3O_003 | 1/1/663:666, 1/1/690:694, 1/1/701:709, 1/1/731:733, 1/1/764:769 | No text annotation | homologous J5_8C3A_003 NA | |
| J5_7Z3O_004 | 1/1/1886:1894, 1/1/1918:1919, 1/1/2072:2073, 1/1/2077:2085, 1/1/2294:2296 | No text annotation | homologous J5_8P9A_013 J5_99177.1 | |
| J5_7Z3O_005 | 1/1/2362:2369, 1/1/2774:2782, 1/1/2826:2835, 1/1/2910:2916, 1/1/2934:2939 | No text annotation | ||
| J5_7Z3O_010 | 1/1/2379:2382, 1/1/2570:2573, 1/1/2586:2587, 1/1/2609:2610, 1/1/2757:2763 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_7Z3O_007 | 1/2/31:35, 1/2/470:475, 1/2/507:511, 1/2/540:543, 1/2/589:592 | No text annotation | ||
| J5_7Z3O_008 | 1/2/54:57, 1/2/89:96, 1/2/383:385, 1/2/406:410, 1/2/417:423 | No text annotation | ||
| J5_7Z3O_011 | 1/2/633:638, 1/2/688:693, 1/2/739:743, 1/2/805:815, 1/2/852:858 | No text annotation | ||
| J6_7Z3O_001 | 1/1/23:28, 1/1/59:69, 1/1/76:80, 1/1/107:111, 1/1/314:324, 1/4/32:35 | No text annotation | ||
| J6_7Z3O_002 | 1/1/2378:2382, 1/1/2570:2573, 1/1/2586:2589, 1/1/2607:2612, 1/1/2713:2724, 1/1/2752:2764 | No text annotation | ||
| J6_7Z3O_003 | 1/1/2379:2382, 1/1/2570:2573, 1/1/2586:2587, 1/1/2609:2612, 1/1/2713:2724, 1/1/2752:2763 | No text annotation | ||
| J7_7Z3O_001 | 1/1/931:936, 1/1/949:950, 1/1/1097:1100, 1/1/1124:1129, 1/1/1140:1144, 1/1/1321:1322, 1/1/1348:1353 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7Z3O_034 | No text annotation | ||
| J3_7Z3O_035 | No text annotation | ||
| J3_7Z3O_005 | No text annotation | ||
| J3_7Z3O_006 | No text annotation | ||
| J3_7Z3O_010 | No text annotation | ||
| J3_7Z3O_041 | No text annotation | ||
| J3_7Z3O_044 | No text annotation | ||
| J3_7Z3O_047 | No text annotation | ||
| J3_7Z3O_048 | No text annotation | ||
| J3_7Z3O_049 | No text annotation | ||
| J3_7Z3O_050 | No text annotation | ||
| J3_7Z3O_021 | No text annotation | ||
| J3_7Z3O_022 | No text annotation | ||
| J3_7Z3O_053 | No text annotation | ||
| J3_7Z3O_024 | No text annotation | ||
| J3_7Z3O_027 | No text annotation | ||
| J5_7Z3O_006 | No text annotation | ||
| J5_7Z3O_009 | No text annotation |
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