HL_7ZAG_008

3D structure

PDB id

7ZAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZAG|1|2|C|329
7ZAG|1|2|A|330
7ZAG|1|2|C|331
7ZAG|1|2|U|332
7ZAG|1|2|G|333
7ZAG|1|2|A|334
7ZAG|1|2|G|335
7ZAG|1|2|A|336
7ZAG|1|2|C|337
7ZAG|1|2|A|338
7ZAG|1|2|C|339
7ZAG|1|2|G|340
7ZAG|1|2|G|341
7ZAG|1|2|G|342

Current chains

Chain 2

rRNA

Nearby chains

Chain E

30S ribosomal protein S4e

Chain G

30S ribosomal protein S6e

Chain J

30S ribosomal protein S8e