RNA 3D Hub //

7ZAG Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7ZAG_0011/2/19:29No text annotation
HL_7ZAG_0021/2/84:89No text annotation
HL_7ZAG_0031/2/155:160No text annotation
HL_7ZAG_0041/2/190:197No text annotation
HL_7ZAG_0051/2/218:223No text annotation
HL_7ZAG_0061/2/268:276No text annotation
HL_7ZAG_0071/2/305:310No text annotation
HL_7ZAG_0081/2/329:342No text annotation
HL_7ZAG_0091/2/351:356No text annotation
HL_7ZAG_0101/2/388:393No text annotation
HL_7ZAG_0111/2/422:426No text annotation
HL_7ZAG_0121/2/444:452No text annotation
HL_7ZAG_0131/2/488:493No text annotation
HL_7ZAG_0141/2/583:589No text annotation
HL_7ZAG_0151/2/656:665No text annotation
HL_7ZAG_0341/2/693:698No text annotation
HL_7ZAG_0171/2/753:763No text annotation
HL_7ZAG_0181/2/809:815No text annotation
HL_7ZAG_0191/2/833:838No text annotation
HL_7ZAG_0351/2/868:873No text annotation
HL_7ZAG_0211/2/935:944No text annotation
HL_7ZAG_0221/2/985:991No text annotation
HL_7ZAG_0361/2/1041:1046No text annotation
HL_7ZAG_0231/2/1054:1061No text annotation
HL_7ZAG_0241/2/1104:1109No text annotation
HL_7ZAG_0251/2/1139:1145No text annotation
HL_7ZAG_0371/2/1239:1244No text annotation
HL_7ZAG_0271/2/1288:1297No text annotation
HL_7ZAG_0281/2/1331:1339No text annotation
HL_7ZAG_0291/2/1419:1424No text annotation
HL_7ZAG_0301/2/1484:1489No text annotation
HL_7ZAG_0311/4/13:22tRNA D-loop
geometric
HL_2AZX_004
HL_20811.4
HL_7ZAG_0321/4/31:39tRNA anticodon loop
geometric
HL_4V90_033
HL_06059.6
HL_7ZAG_0331/4/53:61No text annotation
geometric
HL_2Y9H_003
HL_75660.5

Problematic loops

#loop idProblemSequence
HL_7ZAG_016No text annotation
HL_7ZAG_020No text annotation
HL_7ZAG_026No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7ZAG_0031/2/54:60,
1/2/368:370		No text annotation
IL_7ZAG_0801/2/62:64,
1/2/365:366		No text annotation
IL_7ZAG_0051/2/71:74,
1/2/99:100		No text annotation
IL_7ZAG_0061/2/75:77,
1/2/96:98		No text annotation
IL_7ZAG_0071/2/125:128,
1/2/240:241		No text annotation
IL_7ZAG_0811/2/129:133,
1/2/236:239		No text annotation
IL_7ZAG_0091/2/145:150,
1/2/165:171		No text annotation
IL_7ZAG_0101/2/187:189,
1/2/198:199		No text annotation
IL_7ZAG_0821/2/251:256,
1/2/286:293		No text annotation
IL_7ZAG_0131/2/258:261,
1/2/283:284		No text annotation
IL_7ZAG_0151/2/301:302,
1/2/313:317		No text annotation
IL_7ZAG_0171/2/376:378,
1/2/401:402		No text annotation
IL_7ZAG_0191/2/380:384,
1/2/398:399		No text annotation
IL_7ZAG_0831/2/380:385,
1/2/396:399		No text annotation
IL_7ZAG_0201/2/384:385,
1/2/396:398		No text annotation
IL_7ZAG_0231/2/469:476,
1/2/506:507		No text annotation
IL_7ZAG_0241/2/476:478,
1/2/505:506		No text annotation
IL_7ZAG_0261/2/481:487,
1/2/494:502		No text annotation
IL_7ZAG_0841/2/535:541,
1/2/851:852		No text annotation
IL_7ZAG_0851/2/546:550,
1/2/724:728		No text annotation
IL_7ZAG_0281/2/560:562,
1/2/611:612		No text annotation
IL_7ZAG_0291/2/563:564,
1/2/607:610		No text annotation
IL_7ZAG_0871/2/571:576,
1/2/596:600		No text annotation
IL_7ZAG_0881/2/621:622,
1/2/718:721		No text annotation
IL_7ZAG_0331/2/624:625,
1/2/714:716		No text annotation
IL_7ZAG_0351/2/627:633,
1/2/707:712		No text annotation
IL_7ZAG_0891/2/641:644,
1/2/680:683		No text annotation
IL_7ZAG_0381/2/651:655,
1/2/666:673		No text annotation
IL_7ZAG_0401/2/741:745,
1/2/771:772		No text annotation
IL_7ZAG_0411/2/746:750,
1/2/766:770		No text annotation
IL_7ZAG_0451/2/858:865,
1/2/876:881		No text annotation
IL_7ZAG_0471/2/893:894,
1/2/1367:1369		No text annotation
IL_7ZAG_0481/2/896:898,
1/2/1364:1365		No text annotation
IL_7ZAG_0491/2/904:907,
1/2/1354:1358		No text annotation
IL_7ZAG_0901/2/925:926,
1/2/1200:1202		No text annotation
IL_7ZAG_0531/2/969:971,
1/2/1002:1005		No text annotation
IL_7ZAG_0541/2/971:978,
1/2/998:1002		No text annotation
IL_7ZAG_0551/2/980:982,
1/2/994:996		No text annotation
IL_7ZAG_0561/2/1013:1015,
1/2/1182:1183		No text annotation
IL_7ZAG_0911/2/1017:1021,
1/2/1178:1180		No text annotation
IL_7ZAG_0961/2/1022:1023,
1/2/1173:1177		No text annotation
IL_7ZAG_0931/2/1025:1026,
1/2/1169:1171		No text annotation
IL_7ZAG_0601/2/1038:1051,
1/2/1064:1067		No text annotation
IL_7ZAG_0611/2/1089:1092,
1/2/1119:1123		No text annotation
IL_7ZAG_0621/2/1094:1097,
1/2/1116:1117		No text annotation
IL_7ZAG_0631/2/1132:1135,
1/2/1149:1155		No text annotation
IL_7ZAG_0651/2/1221:1227,
1/2/1258:1264		No text annotation
IL_7ZAG_0661/2/1229:1232,
1/2/1251:1256		No text annotation
IL_7ZAG_0951/2/1233:1236,
1/2/1247:1250		No text annotation
IL_7ZAG_0681/2/1277:1282,
1/2/1303:1308		No text annotation
IL_7ZAG_0691/2/1373:1375,
1/2/1470:1473		No text annotation
IL_7ZAG_0701/2/1375:1378,
1/2/1466:1470		No text annotation
IL_7ZAG_0711/2/1379:1381,
1/2/1463:1465		No text annotation
IL_7ZAG_0721/2/1381:1383,
1/2/1460:1463		No text annotation
IL_7ZAG_0731/2/1386:1388,
1/2/1455:1457		No text annotation
IL_7ZAG_0741/2/1390:1393,
1/2/1450:1453		No text annotation
IL_7ZAG_0751/2/1405:1408,
1/2/1435:1438		No text annotation

Problematic loops

#loop idProblemSequence
IL_7ZAG_001No text annotation
IL_7ZAG_002No text annotation
IL_7ZAG_004No text annotation
IL_7ZAG_008No text annotation
IL_7ZAG_011No text annotation
IL_7ZAG_012No text annotation
IL_7ZAG_014No text annotation
IL_7ZAG_016No text annotation
IL_7ZAG_018No text annotation
IL_7ZAG_021No text annotation
IL_7ZAG_022No text annotation
IL_7ZAG_025No text annotation
IL_7ZAG_027No text annotation
IL_7ZAG_086No text annotation
IL_7ZAG_030No text annotation
IL_7ZAG_031No text annotation
IL_7ZAG_032No text annotation
IL_7ZAG_034No text annotation
IL_7ZAG_036No text annotation
IL_7ZAG_037No text annotation
IL_7ZAG_039No text annotation
IL_7ZAG_042No text annotation
IL_7ZAG_043No text annotation
IL_7ZAG_044No text annotation
IL_7ZAG_046No text annotation
IL_7ZAG_050No text annotation
IL_7ZAG_051No text annotation
IL_7ZAG_052No text annotation
IL_7ZAG_057No text annotation
IL_7ZAG_092No text annotation
IL_7ZAG_058No text annotation
IL_7ZAG_059No text annotation
IL_7ZAG_094No text annotation
IL_7ZAG_064No text annotation
IL_7ZAG_067No text annotation
IL_7ZAG_076No text annotation
IL_7ZAG_077No text annotation
IL_7ZAG_078Isolated non-canonical cWW pair
IL_7ZAG_079No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7ZAG_0111/2/53:54,
1/2/370:376,
1/2/402:404		No text annotation
J3_7ZAG_0021/2/552:554,
1/2/618:621,
1/2/721:722		No text annotation
J3_7ZAG_0121/2/552:554,
1/2/618:622,
1/2/718:722		No text annotation
J3_7ZAG_0031/2/639:640,
1/2/684:692,
1/2/699:701		No text annotation
J3_7ZAG_0131/2/793:796,
1/2/828:832,
1/2/839:845		No text annotation
J3_7ZAG_0141/2/908:911,
1/2/1318:1325,
1/2/1345:1353		No text annotation
J3_7ZAG_0051/2/915:918,
1/2/1209:1211,
1/2/1311:1314		No text annotation
J3_7ZAG_0151/2/927:934,
1/2/945:956,
1/2/1195:1199		No text annotation
J3_7ZAG_0161/2/962:966,
1/2/1008:1012,
1/2/1184:1189		No text annotation
J3_7ZAG_0171/2/1028:1033,
1/2/1072:1077,
1/2/1162:1167		No text annotation
J3_7ZAG_0181/2/1038:1040,
1/2/1047:1051,
1/2/1064:1067		No text annotation
J3_7ZAG_0091/2/1081:1083,
1/2/1129:1132,
1/2/1155:1158		No text annotation
J3_7ZAG_0191/2/1081:1083,
1/2/1129:1135,
1/2/1149:1158		No text annotation
J3_7ZAG_0101/2/1211:1215,
1/2/1270:1277,
1/2/1308:1311		No text annotation
J4_7ZAG_0011/2/111:119,
1/2/247:249,
1/2/295:298,
1/2/320:321		No text annotation
J4_7ZAG_0021/2/139:141,
1/2/175:179,
1/2/207:213,
1/2/228:230		No text annotation
J4_7ZAG_0031/2/541:543,
1/2/731:735,
1/2/778:788,
1/2/850:851		No text annotation
J4_7ZAG_0051/4/7:10,
1/4/25:27,
1/4/43:49,
1/4/65:66		tRNA junction
homologous
J4_1QU2_001
J4_70449.28
J5_7ZAG_0011/2/42:45,
1/2/412:415,
1/2/433:438,
1/2/458:465,
1/2/511:514		No text annotation
J5_7ZAG_0021/2/66:69,
1/2/102:109,
1/2/323:325,
1/2/346:348,
1/2/359:363		No text annotation

Problematic loops

#loop idProblemSequence
J3_7ZAG_001No text annotation
J3_7ZAG_004No text annotation
J3_7ZAG_006No text annotation
J3_7ZAG_007No text annotation
J3_7ZAG_008No text annotation
J4_7ZAG_004No text annotation

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