HL_7ZAG_027

3D structure

PDB id

7ZAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZAG|1|2|C|1288
7ZAG|1|2|U|1289
7ZAG|1|2|G|1290
7ZAG|1|2|C|1291
7ZAG|1|2|A|1292
7ZAG|1|2|A|1293
7ZAG|1|2|C|1294
7ZAG|1|2|U|1295
7ZAG|1|2|C|1296
7ZAG|1|2|G|1297

Current chains

Chain 2

rRNA

Nearby chains

Chain O

30S ribosomal protein S13

Chain P

30S ribosomal protein S14 type Z

Chain T

30S ribosomal protein S19