HL_7ZAH_031

3D structure

PDB id

7ZAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an archaeal aIF5B bound to the ssu translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAGCCUGG(H2U)AG

Length

11 nucleotides

Bulged bases

7ZAH|1|4|C|16, 7ZAH|1|4|G|18, 7ZAH|1|4|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZAH_031 not in the Motif Atlas

Geometric match to HL_5B63_003

Geometric discrepancy: 0.1994

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_65478.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

4

Unit IDs

7ZAH|1|4|C|13
7ZAH|1|4|A|14
7ZAH|1|4|G|15
7ZAH|1|4|C|16
7ZAH|1|4|C|17
7ZAH|1|4|U|17|||A
7ZAH|1|4|G|18
7ZAH|1|4|G|19
7ZAH|1|4|H2U|20
7ZAH|1|4|A|21
7ZAH|1|4|G|22

Current chains

Chain 4

tRNA-MET

Nearby chains