HL_7ZFW_005

3D structure

PDB id

7ZFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 80S ribosome obtained from ssDNA coated grid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

7ZFW|1|L5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZFW_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.4384

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7ZFW|1|L5|U|204
7ZFW|1|L5|C|205
7ZFW|1|L5|U|206
7ZFW|1|L5|G|207
7ZFW|1|L5|A|208
7ZFW|1|L5|U|209
7ZFW|1|L5|C|210
7ZFW|1|L5|G|211

Current chains

Chain L5

RNA (615-MER)

Nearby chains