7ZFW Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7ZFW_001 | 1/L5/37:44 | No text annotation | homologous HL_5TBW_001 NA | |
| HL_7ZFW_002 | 1/L5/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7ZFW_003 | 1/L5/89:95 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_7ZFW_005 | 1/L5/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7ZFW_006 | 1/L5/222:226 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_7ZFW_007 | 1/L5/230:238 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_7ZFW_008 | 1/L5/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_7ZFW_009 | 1/L5/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_7ZFW_013 | 1/L5/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7ZFW_014 | 1/L5/393:398 | GNRA | homologous HL_8C3A_011 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7ZFW_004 | No text annotation | ||
| HL_7ZFW_010 | GNRA with extra cWW | ||
| HL_7ZFW_011 | No text annotation | ||
| HL_7ZFW_012 | No text annotation | ||
| HL_7ZFW_015 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7ZFW_001 | 1/L5/26:27, 1/L5/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7ZFW_002 | 1/L5/30:37, 1/L5/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.1 | |
| IL_7ZFW_003 | 1/L5/81:88, 1/L5/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_7ZFW_004 | 1/L5/118:122, 1/L5/147:153 | No text annotation | ||
| IL_7ZFW_005 | 1/L5/125:126, 1/L5/142:144 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_7ZFW_006 | 1/L5/167:173, 1/L5/263:268 | No text annotation | ||
| IL_7ZFW_008 | 1/L5/195:196, 1/L5/244:246 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_7ZFW_009 | 1/L5/199:201, 1/L5/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7ZFW_010 | 1/L5/387:390, 1/L5/401:414 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_7ZFW_013 | 1/L5/466:472, 1/L5/682:689 | No text annotation | ||
| IL_7ZFW_016 | 1/L5/491:505, 1/L5/653:662 | No text annotation | ||
| IL_7ZFW_021 | 1/L5/508:510, 1/L5/649:650 | Single bulged A | geometric IL_1GID_009 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7ZFW_018 | No text annotation | ||
| IL_7ZFW_007 | No text annotation | ||
| IL_7ZFW_011 | Single bulged C | ||
| IL_7ZFW_019 | Tandem non-canonical cWW pairs | ||
| IL_7ZFW_012 | Isolated non-canonical cWW pair | ||
| IL_7ZFW_022 | Multiple bulged bases | ||
| IL_7ZFW_020 | Isolated non-canonical cWW pair | ||
| IL_7ZFW_014 | Tandem non-canonical cWW pairs | ||
| IL_7ZFW_015 | No text annotation | ||
| IL_7ZFW_017 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7ZFW_001 | 1/L5/112:116, 1/L5/155:160, 1/L5/275:278 | No text annotation | ||
| J4_7ZFW_001 | 1/L5/111:112, 1/L5/278:283, 1/L5/304:310, 1/L5/327:330 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_7ZFW_002 | 1/L5/196:199, 1/L5/215:222, 1/L5/226:228, 1/L5/240:244 | No text annotation |
Problematic loops
No problematic loops
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