HL_7ZFW_010

3D structure

PDB id

7ZFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 80S ribosome obtained from ssDNA coated grid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCGUAA(OMG)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZFW_010 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3485

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7ZFW|1|L5|C|367
7ZFW|1|L5|C|368
7ZFW|1|L5|G|369
7ZFW|1|L5|U|370
7ZFW|1|L5|A|371
7ZFW|1|L5|A|372
7ZFW|1|L5|OMG|373
7ZFW|1|L5|G|374

Current chains

Chain L5

RNA (615-MER)

Nearby chains