HL_7ZJW_001

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGUGGUCU

Length

8 nucleotides

Bulged bases

7ZJW|1|F|G|19, 7ZJW|1|F|G|20, 7ZJW|1|F|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_001 not in the Motif Atlas

Geometric match to HL_3AKZ_010

Geometric discrepancy: 0.3513

The information below is about HL_3AKZ_010

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.3

Basepair signature

cWW-cWS-F

Number of instances in this motif group

16

Unit IDs

7ZJW|1|F|A|16
7ZJW|1|F|G|17
7ZJW|1|F|U|18
7ZJW|1|F|G|19
7ZJW|1|F|G|20
7ZJW|1|F|U|21
7ZJW|1|F|C|22
7ZJW|1|F|U|23

Current chains

Chain F

human Ser-tRNA-Sec

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA