7ZJW Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7ZJW_001 | 1/F/16:23 | tRNA D-loop | geometric HL_3AKZ_010 NA | |
| HL_7ZJW_002 | 1/F/33:41 | tRNA anticodon loop | geometric HL_4YCO_002 HL_06059.6 | |
| HL_7ZJW_003 | 1/F/52:57 | GNRA | geometric HL_5J7L_010 HL_37824.7 | |
| HL_7ZJW_004 | 1/F/66:74 | T-loop with 2 stacked bulged bases | geometric HL_4X4V_001 HL_28252.8 | |
| HL_7ZJW_005 | 1/I/110:115 | No text annotation | ||
| HL_7ZJW_007 | 1/I/185:192 | No text annotation | ||
| HL_7ZJW_008 | 1/L5/37:44 | No text annotation | homologous HL_8C3A_001 NA | |
| HL_7ZJW_009 | 1/L5/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7ZJW_010 | 1/L5/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_7ZJW_011 | 1/L5/131:137 | No text annotation | geometric HL_4LFB_004 HL_48417.5 | |
| HL_7ZJW_012 | 1/L5/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7ZJW_013 | 1/L5/222:226 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_7ZJW_014 | 1/L5/230:238 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_7ZJW_015 | 1/L5/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_7ZJW_016 | 1/L5/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_7ZJW_017 | 1/L5/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7ZJW_130 | 1/L5/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_7ZJW_020 | 1/L5/773:778 | UNCG | geometric HL_4PDB_001 HL_34617.5 | |
| HL_7ZJW_021 | 1/L5/862:870 | No text annotation | geometric HL_4FEN_001 HL_20743.5 | |
| HL_7ZJW_023 | 1/L5/1069:1074 | Mini UNCG | geometric HL_8SP9_002 HL_56334.1 | |
| HL_7ZJW_132 | 1/L5/1261:1270 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_7ZJW_133 | 1/L5/1308:1317 | No text annotation | ||
| HL_7ZJW_027 | 1/L5/1333:1338 | GNRA | homologous HL_8C3A_016 NA | |
| HL_7ZJW_029 | 1/L5/1392:1403 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_7ZJW_030 | 1/L5/1435:1439 | Mini UNCG | geometric HL_4V88_192 NA | |
| HL_7ZJW_031 | 1/L5/1516:1521 | GNRA | homologous HL_8C3A_019 NA | |
| HL_7ZJW_032 | 1/L5/1548:1557 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_7ZJW_033 | 1/L5/1582:1590 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_7ZJW_034 | 1/L5/1630:1635 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_7ZJW_035 | 1/L5/1702:1708 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_7ZJW_036 | 1/L5/1755:1762 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_7ZJW_037 | 1/L5/1803:1809 | GNRA | homologous HL_8C3A_025 NA | |
| HL_7ZJW_038 | 1/L5/1825:1832 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_7ZJW_039 | 1/L5/1917:1927 | No text annotation | homologous HL_8C3A_027 NA | |
| HL_7ZJW_040 | 1/L5/1945:1952 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_7ZJW_041 | 1/L5/2100:2104 | Mini UNCG | geometric HL_5TBW_071 NA | |
| HL_7ZJW_042 | 1/L5/2160:2165 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7ZJW_043 | 1/L5/2219:2227 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_7ZJW_044 | 1/L5/2263:2269 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_7ZJW_045 | 1/L5/2301:2306 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_7ZJW_046 | 1/L5/2312:2314 | No text annotation | ||
| HL_7ZJW_047 | 1/L5/2330:2334 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_7ZJW_048 | 1/L5/2366:2375 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_7ZJW_049 | 1/L5/2404:2409 | GNRA | geometric HL_5F9F_003 HL_37824.7 | |
| HL_7ZJW_050 | 1/L5/2421:2426 | GNRA | homologous HL_8C3A_036 NA | |
| HL_7ZJW_134 | 1/L5/2467:2475 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_7ZJW_052 | 1/L5/2507:2513 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_7ZJW_053 | 1/L5/2548:2553 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_7ZJW_054 | 1/L5/2581:2585 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_7ZJW_055 | 1/L5/2635:2642 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_7ZJW_056 | 1/L5/2653:2659 | GNRA | homologous HL_8C3A_042 NA | |
| HL_7ZJW_057 | 1/L5/2715:2720 | UNCG | homologous HL_8C3A_043 NA | |
| HL_7ZJW_059 | 1/L5/3346:3350 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_7ZJW_135 | 1/L5/3371:3381 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_7ZJW_061 | 1/L5/3400:3406 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_7ZJW_136 | 1/L5/3456:3461 | GNRA | homologous HL_8P9A_159 HL_37824.7 | |
| HL_7ZJW_063 | 1/L5/3489:3499 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_7ZJW_064 | 1/L5/3528:3536 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_7ZJW_065 | 1/L5/3605:3614 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_7ZJW_067 | 1/L5/3830:3835 | No text annotation | ||
| HL_7ZJW_069 | 1/L5/3939:3947 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_7ZJW_070 | 1/L5/3956:3968 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_7ZJW_071 | 1/L5/3996:4004 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_7ZJW_072 | 1/L5/4016:4023 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_7ZJW_073 | 1/L5/4047:4055 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_7ZJW_074 | 1/L5/4067:4072 | GNRA | homologous HL_8C3A_060 NA | |
| HL_7ZJW_075 | 1/L5/4098:4108 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_7ZJW_076 | 1/L5/4163:4171 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_7ZJW_077 | 1/L5/4220:4227 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_7ZJW_078 | 1/L5/4243:4249 | No text annotation | homologous HL_8C3A_064 NA | |
| HL_7ZJW_079 | 1/L5/4286:4291 | GNRA | homologous HL_8C3A_065 NA | |
| HL_7ZJW_080 | 1/L5/4349:4354 | GNRA | homologous HL_8C3A_066 NA | |
| HL_7ZJW_081 | 1/L5/4392:4397 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7ZJW_082 | 1/L5/4434:4448 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7ZJW_137 | 1/L5/4643:4656 | No text annotation | ||
| HL_7ZJW_084 | 1/L5/4645:4655 | No text annotation | ||
| HL_7ZJW_085 | 1/L5/4714:4722 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_7ZJW_086 | 1/L5/4760:4767 | Mini UNCG | homologous HL_8C3A_072 NA | |
| HL_7ZJW_138 | 1/L7/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_7ZJW_087 | 1/L7/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_7ZJW_088 | 1/L7/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_7ZJW_089 | 1/L8/47:56 | Pseudoknot with intercalation | geometric HL_4V9F_001 HL_93438.2 | |
| HL_7ZJW_090 | 1/L8/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_7ZJW_091 | 1/L8/107:112 | No text annotation | geometric HL_4LFB_004 HL_48417.5 | |
| HL_7ZJW_092 | 1/L8/122:128 | Fab BL3-6 binding hairpin with tSW | geometric HL_6DB9_001 HL_22584.6 | |
| HL_7ZJW_093 | 1/S/1132:1139 | No text annotation | ||
| HL_7ZJW_094 | 1/S2/7:17 | No text annotation | geometric HL_4V88_186 NA | |
| HL_7ZJW_095 | 1/S2/69:80 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_7ZJW_096 | 1/S2/156:162 | GNRA related | geometric HL_4V88_188 NA | |
| HL_7ZJW_139 | 1/S2/194:206 | No text annotation | ||
| HL_7ZJW_099 | 1/S2/289:296 | T-loop with 1 bulged base | geometric HL_4V88_191 NA | |
| HL_7ZJW_100 | 1/S2/323:330 | No text annotation | ||
| HL_7ZJW_101 | 1/S2/378:388 | No text annotation | ||
| HL_7ZJW_102 | 1/S2/417:422 | No text annotation | geometric HL_4V88_194 NA | |
| HL_7ZJW_103 | 1/S2/442:453 | No text annotation | geometric HL_4V88_195 NA | |
| HL_7ZJW_140 | 1/S2/463:468 | UNCG | homologous HL_8P9A_200 HL_34617.5 | |
| HL_7ZJW_105 | 1/S2/499:505 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_7ZJW_141 | 1/S2/540:545 | No text annotation | geometric HL_5XUZ_001 HL_69752.2 | |
| HL_7ZJW_107 | 1/S2/570:582 | No text annotation | geometric HL_4V88_199 NA | |
| HL_7ZJW_108 | 1/S2/619:624 | GNRA variation | geometric HL_4V88_200 NA | |
| HL_7ZJW_110 | 1/S2/821:829 | No text annotation | geometric HL_4V88_203 NA | |
| HL_7ZJW_142 | 1/S2/834:842 | No text annotation | ||
| HL_7ZJW_111 | 1/S2/835:839 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_7ZJW_112 | 1/S2/886:902 | No text annotation | homologous HL_8C3A_210 NA | |
| HL_7ZJW_143 | 1/S2/958:967 | No text annotation | homologous HL_8C3A_211 NA | |
| HL_7ZJW_114 | 1/S2/995:1000 | GNRA | geometric HL_4V88_207 NA | |
| HL_7ZJW_115 | 1/S2/1055:1065 | No text annotation | geometric HL_5J7L_017 HL_75293.5 | |
| HL_7ZJW_116 | 1/S2/1115:1120 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_7ZJW_117 | 1/S2/1142:1147 | GNRA | geometric HL_4V88_210 NA | |
| HL_7ZJW_118 | 1/S2/1179:1184 | GNRA | geometric HL_4LFB_020 HL_37824.7 | |
| HL_7ZJW_119 | 1/S2/1246:1255 | No text annotation | geometric HL_4V88_212 NA | |
| HL_7ZJW_145 | 1/S2/1296:1305 | No text annotation | homologous HL_8CRE_217 HL_81538.2 | |
| HL_7ZJW_121 | 1/S2/1354:1359 | GNRA | geometric HL_4V9F_065 HL_37824.7 | |
| HL_7ZJW_122 | 1/S2/1367:1374 | T-loop related | geometric HL_4LFB_025 HL_77436.5 | |
| HL_7ZJW_123 | 1/S2/1418:1423 | Mini UNCG | geometric HL_5SWD_005 HL_48778.2 | |
| HL_7ZJW_124 | 1/S2/1461:1467 | GNRA | geometric HL_4V88_217 NA | |
| HL_7ZJW_125 | 1/S2/1566:1571 | GNRA | geometric HL_3E5C_002 HL_37824.7 | |
| HL_7ZJW_144 | 1/S2/1615:1626 | No text annotation | homologous HL_8C3A_224 NA | |
| HL_7ZJW_127 | 1/S2/1659:1667 | No text annotation | geometric HL_4V88_220 NA | |
| HL_7ZJW_128 | 1/S2/1764:1770 | No text annotation | ||
| HL_7ZJW_129 | 1/S2/1848:1853 | GNRA variation | geometric HL_4V88_222 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7ZJW_006 | No text annotation | ||
| HL_7ZJW_018 | No text annotation | ||
| HL_7ZJW_019 | No text annotation | ||
| HL_7ZJW_131 | No text annotation | ||
| HL_7ZJW_022 | No text annotation | ||
| HL_7ZJW_024 | No text annotation | ||
| HL_7ZJW_025 | No text annotation | ||
| HL_7ZJW_026 | No text annotation | ||
| HL_7ZJW_028 | No text annotation | ||
| HL_7ZJW_051 | No text annotation | ||
| HL_7ZJW_058 | No text annotation | ||
| HL_7ZJW_060 | No text annotation | ||
| HL_7ZJW_062 | No text annotation | ||
| HL_7ZJW_066 | No text annotation | ||
| HL_7ZJW_068 | No text annotation | ||
| HL_7ZJW_083 | No text annotation | ||
| HL_7ZJW_097 | No text annotation | ||
| HL_7ZJW_098 | No text annotation | ||
| HL_7ZJW_104 | No text annotation | ||
| HL_7ZJW_106 | No text annotation | ||
| HL_7ZJW_109 | Externally structured | ||
| HL_7ZJW_113 | No text annotation | ||
| HL_7ZJW_120 | No text annotation | ||
| HL_7ZJW_126 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7ZJW_002 | 1/F/7:9, 1/F/78:80 | Isolated non-canonical cWW pair | geometric IL_4KZD_003 IL_28037.2 | |
| IL_7ZJW_003 | 1/F/13:14, 1/F/25:27 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_7ZJW_362 | 1/F/14:15, 1/F/24:26 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_7ZJW_004 | 1/I/175:179, 1/I/197:201 | No text annotation | ||
| IL_7ZJW_363 | 1/I/181:183, 1/I/194:195 | No text annotation | ||
| IL_7ZJW_006 | 1/L5/6:7, 1/L8/149:151 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_7ZJW_007 | 1/L5/12:14, 1/L8/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_7ZJW_008 | 1/L5/16:18, 1/L8/139:141 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_7ZJW_009 | 1/L5/26:27, 1/L5/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7ZJW_010 | 1/L5/30:37, 1/L5/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_84694.2 | |
| IL_7ZJW_011 | 1/L5/81:88, 1/L5/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_7ZJW_012 | 1/L5/118:121, 1/L5/152:153 | Stack outside cWW | geometric IL_5J7L_268 IL_56987.1 | |
| IL_7ZJW_302 | 1/L5/118:122, 1/L5/147:153 | No text annotation | ||
| IL_7ZJW_013 | 1/L5/121:122, 1/L5/147:152 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_7ZJW_014 | 1/L5/125:126, 1/L5/142:144 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_7ZJW_015 | 1/L5/168:173, 1/L5/263:267 | No text annotation | ||
| IL_7ZJW_016 | 1/L5/180:182, 1/L5/255:256 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_7ZJW_303 | 1/L5/184:189, 1/L5/252:253 | No text annotation | ||
| IL_7ZJW_018 | 1/L5/195:196, 1/L5/244:246 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_7ZJW_019 | 1/L5/199:201, 1/L5/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7ZJW_020 | 1/L5/339:342, 1/L8/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_7ZJW_021 | 1/L5/348:350, 1/L8/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_7ZJW_022 | 1/L5/387:390, 1/L5/401:414 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_7ZJW_024 | 1/L5/415:421, 1/L8/13:19 | Triple sheared with non-canonical cWW | geometric IL_5TBW_015 NA | |
| IL_7ZJW_025 | 1/L5/443:446, 1/L5/1244:1248 | No text annotation | geometric IL_3MEI_004 IL_51479.1 | |
| IL_7ZJW_026 | 1/L5/448:450, 1/L5/1241:1242 | Single bulged C | geometric IL_4C7O_003 IL_61258.15 | |
| IL_7ZJW_027 | 1/L5/459:460, 1/L5/689:691 | Single bulged C | geometric IL_4WF9_035 IL_61258.15 | |
| IL_7ZJW_028 | 1/L5/462:464, 1/L5/685:687 | Isolated non-canonical cWW pair | geometric IL_5TBW_378 NA | |
| IL_7ZJW_029 | 1/L5/466:472, 1/L5/676:683 | No text annotation | ||
| IL_7ZJW_030 | 1/L5/481:483, 1/L5/666:667 | Single bulged U | geometric IL_2R8S_004 IL_89505.4 | |
| IL_7ZJW_031 | 1/L5/483:486, 1/L5/665:666 | Multiple bulged bases | geometric IL_6JXM_001 IL_84476.1 | |
| IL_7ZJW_032 | 1/L5/488:489, 1/L5/659:663 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_7ZJW_033 | 1/L5/492:494, 1/L5/655:656 | Single bulged U | geometric IL_3WBM_001 IL_89505.4 | |
| IL_7ZJW_034 | 1/L5/498:500, 1/L5/650:651 | No text annotation | ||
| IL_7ZJW_035 | 1/L5/501:506, 1/L5/648:649 | Multiple bulged bases | geometric IL_1R3E_001 IL_84476.1 | |
| IL_7ZJW_036 | 1/L5/510:512, 1/L5/643:644 | Single bulged A | geometric IL_6WPI_001 IL_31462.6 | |
| IL_7ZJW_037 | 1/L5/514:517, 1/L5/640:641 | Multiple bulged bases | geometric IL_4YAZ_008 IL_82107.4 | |
| IL_7ZJW_364 | 1/L5/522:523, 1/L5/632:635 | No text annotation | ||
| IL_7ZJW_039 | 1/L5/703:704, 1/L5/1230:1232 | Single bulged G | geometric IL_4LFB_036 IL_00225.13 | |
| IL_7ZJW_040 | 1/L5/717:718, 1/L5/842:845 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_7ZJW_041 | 1/L5/721:725, 1/L5/838:839 | No text annotation | ||
| IL_7ZJW_042 | 1/L5/726:729, 1/L5/827:837 | No text annotation | ||
| IL_7ZJW_043 | 1/L5/731:735, 1/L5/821:825 | No text annotation | ||
| IL_7ZJW_044 | 1/L5/740:747, 1/L5/808:816 | No text annotation | geometric IL_8C3A_022 NA | |
| IL_7ZJW_045 | 1/L5/756:765, 1/L5/786:799 | No text annotation | ||
| IL_7ZJW_046 | 1/L5/988:989, 1/L5/1123:1125 | Single bulged A | geometric IL_2VPL_002 IL_31462.6 | |
| IL_7ZJW_048 | 1/L5/997:999, 1/L5/1104:1108 | Isolated cWS basepair | geometric IL_4TS2_003 NA | |
| IL_7ZJW_049 | 1/L5/1001:1002, 1/L5/1100:1102 | Single bulged C | geometric IL_3W3S_001 IL_61258.15 | |
| IL_7ZJW_050 | 1/L5/1005:1010, 1/L5/1092:1097 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_7ZJW_051 | 1/L5/1011:1012, 1/L5/1089:1091 | Single bulged U | geometric IL_5TBW_146 NA | |
| IL_7ZJW_053 | 1/L5/1061:1064, 1/L5/1079:1083 | No text annotation | geometric IL_8C3A_009 NA | |
| IL_7ZJW_054 | 1/L5/1064:1066, 1/L5/1077:1079 | Isolated cWH basepair | geometric IL_3W3S_003 IL_10167.6 | |
| IL_7ZJW_055 | 1/L5/1301:1304, 1/L5/1323:1326 | No text annotation | ||
| IL_7ZJW_305 | 1/L5/1301:1305, 1/L5/1320:1326 | No text annotation | ||
| IL_7ZJW_056 | 1/L5/1304:1305, 1/L5/1320:1323 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.4 | |
| IL_7ZJW_057 | 1/L5/1380:1384, 1/L5/1410:1415 | Triple sheared related | geometric IL_4V9F_018 IL_97631.1 | |
| IL_7ZJW_058 | 1/L5/1386:1389, 1/L5/1405:1408 | Double sheared | geometric IL_4LFB_060 IL_09705.15 | |
| IL_7ZJW_059 | 1/L5/1390:1392, 1/L5/1403:1404 | Single bulged C | geometric IL_6ZDP_001 IL_61258.15 | |
| IL_7ZJW_060 | 1/L5/1422:1423, 1/L5/1451:1453 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_7ZJW_061 | 1/L5/1429:1431, 1/L5/1444:1445 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_7ZJW_062 | 1/L5/1434:1435, 1/L5/1439:1441 | No text annotation | ||
| IL_7ZJW_306 | 1/L5/1475:1477, 1/L5/1610:1612 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_7ZJW_307 | 1/L5/1477:1481, 1/L5/1603:1610 | No text annotation | homologous IL_8P9A_256 IL_54041.2 | |
| IL_7ZJW_064 | 1/L5/1500:1501, 1/L5/1567:1569 | Single bulged A | homologous IL_8C3A_031 NA | |
| IL_7ZJW_065 | 1/L5/1505:1506, 1/L5/1531:1533 | Single bulged G | geometric IL_4V9F_026 IL_00225.13 | |
| IL_7ZJW_066 | 1/L5/1506:1510, 1/L5/1527:1531 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_7ZJW_067 | 1/L5/1541:1544, 1/L5/1560:1562 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_7ZJW_068 | 1/L5/1545:1547, 1/L5/1558:1559 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_7ZJW_069 | 1/L5/1579:1581, 1/L5/1591:1595 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_7ZJW_070 | 1/L5/1626:1628, 1/L5/1637:1639 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_7ZJW_071 | 1/L5/1641:1643, 1/L5/1787:1790 | No text annotation | ||
| IL_7ZJW_072 | 1/L5/1649:1660, 1/L5/1780:1781 | No text annotation | ||
| IL_7ZJW_073 | 1/L5/1662:1664, 1/L5/1777:1778 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_7ZJW_308 | 1/L5/1671:1676, 1/L5/1731:1736 | No text annotation | ||
| IL_7ZJW_309 | 1/L5/1676:1677, 1/L5/1729:1731 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_7ZJW_310 | 1/L5/1678:1683, 1/L5/1725:1728 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_7ZJW_311 | 1/L5/1685:1688, 1/L5/1720:1723 | No text annotation | homologous IL_8P9A_269 IL_77658.1 | |
| IL_7ZJW_312 | 1/L5/1688:1690, 1/L5/1718:1720 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_7ZJW_077 | 1/L5/1692:1695, 1/L5/1715:1716 | Major groove minor groove platform; mini C-loop | geometric IL_4LFB_025 IL_68140.4 | |
| IL_7ZJW_313 | 1/L5/1700:1702, 1/L5/1708:1710 | Isolated non-canonical cWW pair | geometric IL_7ECK_015 IL_87907.2 | |
| IL_7ZJW_079 | 1/L5/1753:1755, 1/L5/1762:1763 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_7ZJW_314 | 1/L5/1797:1799, 1/L5/1813:1815 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_87907.2 | |
| IL_7ZJW_081 | 1/L5/1844:1848, 1/L5/2006:2010 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7ZJW_082 | 1/L5/1850:1857, 1/L5/2003:2004 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_7ZJW_083 | 1/L5/1857:1859, 1/L5/2002:2003 | No text annotation | ||
| IL_7ZJW_084 | 1/L5/1859:1861, 1/L5/2001:2002 | No text annotation | ||
| IL_7ZJW_085 | 1/L5/1865:1872, 1/L5/1992:1997 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_7ZJW_086 | 1/L5/1872:1883, 1/L5/1977:1992 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_7ZJW_087 | 1/L5/1885:1887, 1/L5/1974:1975 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_7ZJW_088 | 1/L5/1896:1904, 1/L5/1961:1965 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_7ZJW_316 | 1/L5/1908:1910, 1/L5/1934:1957 | No text annotation | ||
| IL_7ZJW_089 | 1/L5/1912:1916, 1/L5/1928:1932 | No text annotation | homologous IL_8C3A_058 NA | |
| IL_7ZJW_090 | 1/L5/2022:2024, 1/L5/2115:2116 | Single bulged U | geometric IL_6CZR_156 NA | |
| IL_7ZJW_091 | 1/L5/2133:2135, 1/L5/2185:2188 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7ZJW_092 | 1/L5/2142:2144, 1/L5/2177:2178 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_7ZJW_093 | 1/L5/2145:2152, 1/L5/2172:2176 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_7ZJW_094 | 1/L5/2155:2157, 1/L5/2168:2169 | Single bulged A | geometric IL_5WWT_001 IL_31462.6 | |
| IL_7ZJW_317 | 1/L5/2201:2208, 1/L5/3589:3595 | No text annotation | ||
| IL_7ZJW_095 | 1/L5/2249:2252, 1/L5/2626:2627 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_50694.7 | |
| IL_7ZJW_318 | 1/L5/2258:2262, 1/L5/2270:2272 | C-loop | homologous IL_8C3A_482 NA | |
| IL_7ZJW_097 | 1/L5/2289:2293, 1/L5/2352:2357 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_7ZJW_098 | 1/L5/2320:2322, 1/L5/2342:2343 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_7ZJW_099 | 1/L5/2385:2390, 1/L5/2615:2617 | Isolated non-canonical cWW pair | geometric IL_5J7L_009 IL_57744.1 | |
| IL_7ZJW_100 | 1/L5/2392:2393, 1/L5/2611:2613 | Single bulged U | geometric IL_2R8S_004 IL_89505.4 | |
| IL_7ZJW_101 | 1/L5/2432:2436, 1/L5/2595:2599 | Triple sheared | homologous IL_8C3A_073 NA | |
| IL_7ZJW_102 | 1/L5/2456:2457, 1/L5/2567:2569 | Single bulged C | homologous IL_8C3A_075 NA | |
| IL_7ZJW_103 | 1/L5/2457:2458, 1/L5/2565:2567 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_7ZJW_104 | 1/L5/2489:2491, 1/L5/2528:2531 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_85599.2 | |
| IL_7ZJW_105 | 1/L5/2494:2496, 1/L5/2524:2525 | Single bulged G | geometric IL_3NDB_004 IL_00225.13 | |
| IL_7ZJW_106 | 1/L5/2499:2505, 1/L5/2515:2521 | No text annotation | homologous IL_8C3A_079 NA | |
| IL_7ZJW_107 | 1/L5/2547:2548, 1/L5/2553:2555 | No text annotation | ||
| IL_7ZJW_319 | 1/L5/2675:2681, 1/L5/3582:3585 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_7ZJW_320 | 1/L5/2687:2689, 1/L5/3574:3576 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_7ZJW_321 | 1/L5/2690:2693, 1/L5/3572:3573 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_7ZJW_322 | 1/L5/2690:2698, 1/L5/3569:3573 | No text annotation | homologous IL_8P9A_305 IL_22854.4 | |
| IL_7ZJW_111 | 1/L5/2693:2698, 1/L5/3569:3572 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_7ZJW_112 | 1/L5/2710:2715, 1/L5/2720:2726 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
| IL_7ZJW_113 | 1/L5/2732:2734, 1/L5/3342:3344 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_7ZJW_114 | 1/L5/2739:2740, 1/L5/3334:3337 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_7ZJW_117 | 1/L5/3364:3365, 1/L5/3559:3561 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_7ZJW_118 | 1/L5/3392:3397, 1/L5/3409:3416 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_7ZJW_120 | 1/L5/3432:3435, 1/L5/3481:3482 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_7ZJW_121 | 1/L5/3436:3437, 1/L5/3477:3480 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_7ZJW_123 | 1/L5/3440:3442, 1/L5/3473:3474 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_7ZJW_124 | 1/L5/3442:3446, 1/L5/3471:3473 | No text annotation | geometric IL_8C3A_092 NA | |
| IL_7ZJW_323 | 1/L5/3447:3453, 1/L5/3464:3470 | No text annotation | homologous IL_8P9A_316 IL_88116.2 | |
| IL_7ZJW_128 | 1/L5/3512:3513, 1/L5/3543:3546 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_7ZJW_324 | 1/L5/3513:3524, 1/L5/3540:3543 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_7ZJW_131 | 1/L5/3627:3630, 1/L5/4309:4311 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_7ZJW_133 | 1/L5/3632:3634, 1/L5/4304:4307 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_7ZJW_134 | 1/L5/3645:3647, 1/L5/4134:4135 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_7ZJW_135 | 1/L5/3648:3649, 1/L5/4130:4133 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_7ZJW_137 | 1/L5/3659:3661, 1/L5/3927:3930 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_7ZJW_138 | 1/L5/3673:3678, 1/L5/3794:3800 | No text annotation | ||
| IL_7ZJW_325 | 1/L5/3673:3681, 1/L5/3791:3800 | No text annotation | ||
| IL_7ZJW_139 | 1/L5/3678:3681, 1/L5/3791:3794 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
| IL_7ZJW_365 | 1/L5/3687:3698, 1/L5/3783:3785 | No text annotation | ||
| IL_7ZJW_141 | 1/L5/3810:3816, 1/L5/3907:3910 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_7ZJW_142 | 1/L5/3818:3820, 1/L5/3904:3905 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_7ZJW_143 | 1/L5/3861:3863, 1/L5/3895:3897 | Isolated cWH basepair | geometric IL_3R1D_002 IL_10167.6 | |
| IL_7ZJW_144 | 1/L5/3865:3873, 1/L5/3885:3893 | No text annotation | ||
| IL_7ZJW_145 | 1/L5/3873:3875, 1/L5/3882:3885 | No text annotation | geometric IL_4WSM_372 IL_09990.4 | |
| IL_7ZJW_146 | 1/L5/3937:3938, 1/L5/3948:3950 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_7ZJW_147 | 1/L5/3989:3991, 1/L5/4009:4013 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_7ZJW_327 | 1/L5/4037:4039, 1/L5/4063:4064 | No text annotation | ||
| IL_7ZJW_328 | 1/L5/4041:4044, 1/L5/4058:4061 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_7ZJW_150 | 1/L5/4093:4096, 1/L5/4110:4111 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_7ZJW_329 | 1/L5/4146:4149, 1/L5/4186:4190 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_7ZJW_330 | 1/L5/4149:4151, 1/L5/4185:4186 | No text annotation | homologous IL_8P9A_331 IL_07039.3 | |
| IL_7ZJW_152 | 1/L5/4151:4153, 1/L5/4181:4185 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_7ZJW_154 | 1/L5/4158:4162, 1/L5/4172:4176 | Triple sheared | geometric IL_7A0S_087 IL_17948.2 | |
| IL_7ZJW_155 | 1/L5/4199:4200, 1/L5/4272:4274 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_7ZJW_331 | 1/L5/4202:4204, 1/L5/4266:4270 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_7ZJW_157 | 1/L5/4204:4205, 1/L5/4263:4266 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_7ZJW_158 | 1/L5/4212:4214, 1/L5/4235:4237 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_7ZJW_332 | 1/L5/4212:4216, 1/L5/4231:4237 | No text annotation | ||
| IL_7ZJW_159 | 1/L5/4214:4216, 1/L5/4231:4235 | No text annotation | geometric IL_3DD2_004 IL_55516.2 | |
| IL_7ZJW_162 | 1/L5/4241:4243, 1/L5/4249:4251 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_7ZJW_164 | 1/L5/4283:4284, 1/L5/4293:4295 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_7ZJW_167 | 1/L5/4326:4328, 1/L5/4467:4469 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_7ZJW_168 | 1/L5/4328:4331, 1/L5/4463:4467 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_7ZJW_333 | 1/L5/4336:4338, 1/L5/4364:4366 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_28037.2 | |
| IL_7ZJW_169 | 1/L5/4342:4349, 1/L5/4354:4360 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_7ZJW_334 | 1/L5/4370:4375, 1/L5/4415:4419 | No text annotation | ||
| IL_7ZJW_335 | 1/L5/4378:4383, 1/L5/4408:4412 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_7ZJW_172 | 1/L5/4384:4386, 1/L5/4405:4407 | Isolated cWH basepair | geometric IL_3R1C_012 IL_10167.6 | |
| IL_7ZJW_173 | 1/L5/4387:4388, 1/L5/4401:4404 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_7ZJW_174 | 1/L5/4426:4431, 1/L5/4451:4456 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
| IL_7ZJW_175 | 1/L5/4486:4489, 1/L5/4697:4698 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_7ZJW_176 | 1/L5/4490:4493, 1/L5/4693:4696 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_7ZJW_177 | 1/L5/4496:4498, 1/L5/4687:4690 | No text annotation | ||
| IL_7ZJW_178 | 1/L5/4503:4513, 1/L5/4607:4616 | No text annotation | homologous IL_8P9A_352 IL_42231.1 | |
| IL_7ZJW_179 | 1/L5/4516:4519, 1/L5/4602:4604 | Major groove platform with extra cWW | geometric IL_3PDR_004 IL_51387.2 | |
| IL_7ZJW_180 | 1/L5/4624:4627, 1/L5/4670:4673 | Tandem non-canonical cWW pairs | geometric IL_4K27_003 IL_77658.1 | |
| IL_7ZJW_181 | 1/L5/4630:4635, 1/L5/4663:4667 | No text annotation | ||
| IL_7ZJW_182 | 1/L5/4638:4640, 1/L5/4659:4660 | Single bulged C | geometric IL_5TBW_002 NA | |
| IL_7ZJW_183 | 1/L5/4643:4645, 1/L5/4655:4656 | Single stack bend | geometric IL_7RQB_005 NA | |
| IL_7ZJW_336 | 1/L5/4711:4714, 1/L5/4722:4725 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_77658.1 | |
| IL_7ZJW_184 | 1/L5/4731:4733, 1/L5/4796:4798 | Isolated non-canonical cWW pair | geometric IL_3IVK_002 IL_87907.2 | |
| IL_7ZJW_185 | 1/L5/4735:4736, 1/L5/4792:4794 | Single bulged C | geometric IL_1KUQ_002 IL_61258.15 | |
| IL_7ZJW_186 | 1/L5/4739:4741, 1/L5/4784:4789 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_7ZJW_187 | 1/L5/4742:4748, 1/L5/4778:4783 | No text annotation | ||
| IL_7ZJW_189 | 1/L5/4751:4753, 1/L5/4774:4775 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_7ZJW_190 | 1/L5/4753:4756, 1/L5/4771:4774 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_7ZJW_191 | 1/L7/15:16, 1/L7/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_7ZJW_192 | 1/L7/21:27, 1/L7/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_7ZJW_193 | 1/L7/28:29, 1/L7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_7ZJW_194 | 1/L7/32:36, 1/L7/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_7ZJW_195 | 1/L7/71:78, 1/L7/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_7ZJW_196 | 1/L7/79:81, 1/L7/95:97 | No text annotation | geometric IL_7RQB_015 NA | |
| IL_7ZJW_197 | 1/L7/82:85, 1/L7/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_7ZJW_337 | 1/L8/64:66, 1/L8/92:95 | No text annotation | homologous IL_8P9A_371 IL_07785.1 | |
| IL_7ZJW_199 | 1/S/1117:1119, 1/S/1149:1151 | No text annotation | ||
| IL_7ZJW_200 | 1/S/1119:1130, 1/S/1141:1149 | No text annotation | ||
| IL_7ZJW_338 | 1/S2/23:25, 1/S2/650:652 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 IL_87907.2 | |
| IL_7ZJW_339 | 1/S2/34:36, 1/S2/520:522 | Isolated non-canonical cWW pair | homologous IL_8C3A_393 NA | |
| IL_7ZJW_203 | 1/S2/37:40, 1/S2/515:519 | Double sheared | geometric IL_4WF9_016 IL_09705.15 | |
| IL_7ZJW_204 | 1/S2/41:47, 1/S2/480:482 | No text annotation | geometric IL_4V88_387 NA | |
| IL_7ZJW_205 | 1/S2/49:51, 1/S2/477:478 | Minor groove platform | geometric IL_4LFB_004 IL_51454.3 | |
| IL_7ZJW_206 | 1/S2/57:62, 1/S2/86:88 | No text annotation | geometric IL_4V88_389 NA | |
| IL_7ZJW_207 | 1/S2/63:68, 1/S2/81:85 | No text annotation | geometric IL_4V88_390 NA | |
| IL_7ZJW_209 | 1/S2/108:110, 1/S2/352:354 | Stack and bulge | geometric IL_2O3X_001 IL_31737.3 | |
| IL_7ZJW_210 | 1/S2/110:112, 1/S2/350:352 | No text annotation | geometric IL_4KR9_001 NA | |
| IL_7ZJW_340 | 1/S2/110:115, 1/S2/349:352 | No text annotation | homologous IL_8P9A_380 IL_77658.1 | |
| IL_7ZJW_211 | 1/S2/112:115, 1/S2/349:350 | Multiple bulged bases | geometric IL_5WLH_001 IL_82107.4 | |
| IL_7ZJW_341 | 1/S2/116:121, 1/S2/344:348 | No text annotation | homologous IL_8P9A_382 IL_29223.1 | |
| IL_7ZJW_213 | 1/S2/123:124, 1/S2/340:342 | Minor groove platform | geometric IL_4UYK_001 IL_51454.3 | |
| IL_7ZJW_342 | 1/S2/145:151, 1/S2/167:174 | No text annotation | homologous IL_8C3A_402 NA | |
| IL_7ZJW_343 | 1/S2/152:154, 1/S2/164:166 | No text annotation | homologous IL_8P9A_384 IL_44465.1 | |
| IL_7ZJW_344 | 1/S2/188:194, 1/S2/206:211 | No text annotation | ||
| IL_7ZJW_217 | 1/S2/216:219, 1/S2/303:310 | No text annotation | ||
| IL_7ZJW_218 | 1/S2/313:315, 1/S2/337:338 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_7ZJW_219 | 1/S2/318:320, 1/S2/333:334 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_7ZJW_220 | 1/S2/360:365, 1/S2/397:404 | Kink-turn with non-sequential stacking | geometric IL_4V88_402 NA | |
| IL_7ZJW_221 | 1/S2/367:372, 1/S2/394:395 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_7ZJW_222 | 1/S2/412:414, 1/S2/425:430 | No text annotation | geometric IL_4V88_404 NA | |
| IL_7ZJW_223 | 1/S2/438:440, 1/S2/455:457 | Isolated cWH basepair | geometric IL_4V88_405 NA | |
| IL_7ZJW_345 | 1/S2/460:462, 1/S2/469:471 | Isolated non-canonical cWW pair | homologous IL_8C3A_414 NA | |
| IL_7ZJW_346 | 1/S2/488:490, 1/S2/512:513 | Single bulged U | geometric IL_4LFB_014 IL_89505.4 | |
| IL_7ZJW_366 | 1/S2/492:496, 1/S2/509:510 | No text annotation | homologous IL_8P9A_397 IL_03109.3 | |
| IL_7ZJW_367 | 1/S2/496:497, 1/S2/507:509 | Single bulged G | homologous IL_8P9A_398 IL_00225.13 | |
| IL_7ZJW_225 | 1/S2/530:531, 1/S2/555:557 | Single bulged A | geometric IL_6WPI_001 IL_31462.6 | |
| IL_7ZJW_226 | 1/S2/536:538, 1/S2/547:550 | No text annotation | ||
| IL_7ZJW_227 | 1/S2/564:566, 1/S2/586:593 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_7ZJW_348 | 1/S2/567:570, 1/S2/582:585 | Tandem non-canonical cWW pairs | geometric IL_6JDV_001 IL_77658.1 | |
| IL_7ZJW_229 | 1/S2/600:607, 1/S2/637:638 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_7ZJW_230 | 1/S2/607:609, 1/S2/636:637 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_7ZJW_232 | 1/S2/612:618, 1/S2/625:633 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_7ZJW_233 | 1/S2/664:666, 1/S2/1163:1165 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_7ZJW_234 | 1/S2/666:672, 1/S2/1162:1163 | No text annotation | geometric IL_4LFB_022 IL_38186.6 | |
| IL_7ZJW_235 | 1/S2/674:676, 1/S2/1031:1033 | Isolated non-canonical cWW pair | geometric IL_4V88_417 NA | |
| IL_7ZJW_236 | 1/S2/677:681, 1/S2/1026:1030 | tSH-tHW-tHS | geometric IL_4V88_418 NA | |
| IL_7ZJW_238 | 1/S2/746:750, 1/S2/795:797 | Other IL | geometric IL_5M0H_001 NA | |
| IL_7ZJW_368 | 1/S2/746:755, 1/S2/791:797 | No text annotation | ||
| IL_7ZJW_239 | 1/S2/752:755, 1/S2/791:793 | Isolated non-canonical cWW pair | geometric IL_4X4N_005 IL_87907.2 | |
| IL_7ZJW_240 | 1/S2/756:757, 1/S2/788:790 | Single stack bend | geometric IL_7RQB_024 NA | |
| IL_7ZJW_350 | 1/S2/803:804, 1/S2/861:864 | No text annotation | homologous IL_8P9A_412 IL_68140.4 | |
| IL_7ZJW_242 | 1/S2/806:808, 1/S2/857:859 | Isolated non-canonical cWW pair | geometric IL_5TBW_115 NA | |
| IL_7ZJW_369 | 1/S2/808:816, 1/S2/850:857 | No text annotation | homologous IL_8CRE_430 IL_59049.1 | |
| IL_7ZJW_244 | 1/S2/834:835, 1/S2/839:842 | No text annotation | ||
| IL_7ZJW_245 | 1/S2/875:877, 1/S2/911:913 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 IL_87907.2 | |
| IL_7ZJW_246 | 1/S2/878:880, 1/S2/908:910 | Isolated non-canonical cWW pair | geometric IL_4LFB_006 IL_87907.2 | |
| IL_7ZJW_247 | 1/S2/923:924, 1/S2/1020:1023 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_7ZJW_351 | 1/S2/926:927, 1/S2/1016:1018 | Single bulged U | geometric IL_6UFH_004 IL_89505.4 | |
| IL_7ZJW_249 | 1/S2/929:932, 1/S2/1011:1014 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_7ZJW_250 | 1/S2/932:936, 1/S2/1008:1011 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_7ZJW_251 | 1/S2/943:946, 1/S2/982:985 | Tandem non-canonical cWW pairs | geometric IL_4V88_432 NA | |
| IL_7ZJW_252 | 1/S2/953:957, 1/S2/968:975 | Kink-turn | geometric IL_4V88_434 NA | |
| IL_7ZJW_253 | 1/S2/1043:1048, 1/S2/1072:1074 | Other IL | geometric IL_4V88_435 NA | |
| IL_7ZJW_254 | 1/S2/1048:1052, 1/S2/1068:1072 | tSH-tHW-tHS | geometric IL_5J7L_037 IL_17136.7 | |
| IL_7ZJW_255 | 1/S2/1092:1094, 1/S2/1153:1159 | No text annotation | geometric IL_4V88_437 NA | |
| IL_7ZJW_256 | 1/S2/1099:1102, 1/S2/1132:1135 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_7ZJW_257 | 1/S2/1102:1104, 1/S2/1130:1132 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_7ZJW_258 | 1/S2/1109:1111, 1/S2/1124:1125 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_7ZJW_259 | 1/S2/1169:1176, 1/S2/1187:1192 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_4V88_440 NA | |
| IL_7ZJW_261 | 1/S2/1204:1205, 1/S2/1695:1697 | Single bulged A | geometric IL_4LFB_035 IL_31462.6 | |
| IL_7ZJW_352 | 1/S2/1207:1209, 1/S2/1692:1693 | Single bulged G | homologous IL_8C3A_448 NA | |
| IL_7ZJW_263 | 1/S2/1215:1218, 1/S2/1682:1686 | C-loop | geometric IL_4V88_443 NA | |
| IL_7ZJW_353 | 1/S2/1231:1233, 1/S2/1527:1529 | Isolated non-canonical cWW pair | homologous IL_8P9A_432 IL_87907.2 | |
| IL_7ZJW_266 | 1/S2/1236:1237, 1/S2/1522:1524 | Minor groove platform | geometric IL_4V88_445 NA | |
| IL_7ZJW_267 | 1/S2/1271:1273, 1/S2/1511:1513 | Isolated non-canonical cWW pair | geometric IL_5MWI_003 IL_87907.2 | |
| IL_7ZJW_268 | 1/S2/1281:1288, 1/S2/1315:1318 | No text annotation | ||
| IL_7ZJW_370 | 1/S2/1282:1294, 1/S2/1307:1317 | No text annotation | ||
| IL_7ZJW_269 | 1/S2/1288:1292, 1/S2/1309:1315 | No text annotation | ||
| IL_7ZJW_270 | 1/S2/1292:1294, 1/S2/1307:1309 | No text annotation | geometric IL_4V88_448 NA | |
| IL_7ZJW_355 | 1/S2/1326:1328, 1/S2/1503:1504 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_7ZJW_272 | 1/S2/1330:1334, 1/S2/1499:1501 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_7ZJW_356 | 1/S2/1330:1336, 1/S2/1493:1501 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_7ZJW_273 | 1/S2/1334:1336, 1/S2/1493:1499 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_7ZJW_357 | 1/S2/1338:1339, 1/S2/1489:1491 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_7ZJW_358 | 1/S2/1348:1350, 1/S2/1381:1383 | Isolated cWH basepair | homologous IL_8P9A_442 IL_10167.6 | |
| IL_7ZJW_276 | 1/S2/1364:1366, 1/S2/1375:1376 | Minor groove platform | geometric IL_4V88_454 NA | |
| IL_7ZJW_359 | 1/S2/1396:1400, 1/S2/1448:1451 | No text annotation | geometric IL_8P9A_419 IL_85033.2 | |
| IL_7ZJW_279 | 1/S2/1403:1406, 1/S2/1442:1445 | Minor groove platform | geometric IL_4V88_456 NA | |
| IL_7ZJW_280 | 1/S2/1409:1410, 1/S2/1433:1439 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_7ZJW_281 | 1/S2/1413:1414, 1/S2/1428:1430 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_7ZJW_282 | 1/S2/1417:1418, 1/S2/1423:1425 | No text annotation | ||
| IL_7ZJW_283 | 1/S2/1538:1540, 1/S2/1595:1597 | Isolated non-canonical cWW pair | geometric IL_4KYY_001 IL_28037.2 | |
| IL_7ZJW_360 | 1/S2/1542:1551, 1/S2/1583:1593 | No text annotation | ||
| IL_7ZJW_284 | 1/S2/1551:1559, 1/S2/1578:1583 | 180 degree turn | geometric IL_4LFB_052 IL_11344.2 | |
| IL_7ZJW_285 | 1/S2/1561:1563, 1/S2/1574:1576 | Isolated non-canonical cWW pair | geometric IL_5TBW_016 NA | |
| IL_7ZJW_286 | 1/S2/1605:1611, 1/S2/1630:1636 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_7ZJW_287 | 1/S2/1701:1703, 1/S2/1834:1837 | No text annotation | geometric IL_4V88_463 NA | |
| IL_7ZJW_288 | 1/S2/1703:1706, 1/S2/1830:1834 | No text annotation | homologous IL_8P9A_453 IL_65718.4 | |
| IL_7ZJW_289 | 1/S2/1707:1709, 1/S2/1827:1829 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_7ZJW_290 | 1/S2/1709:1712, 1/S2/1823:1827 | No text annotation | homologous IL_8CRE_469 IL_11399.2 | |
| IL_7ZJW_291 | 1/S2/1715:1717, 1/S2/1818:1820 | Isolated non-canonical cWW pair | geometric IL_4J50_002 IL_87907.2 | |
| IL_7ZJW_292 | 1/S2/1718:1721, 1/S2/1814:1817 | Double sheared | geometric IL_4V88_468 NA | |
| IL_7ZJW_293 | 1/S2/1721:1723, 1/S2/1813:1814 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_7ZJW_294 | 1/S2/1730:1732, 1/S2/1804:1806 | Isolated non-canonical cWW pair | geometric IL_5TBW_016 NA | |
| IL_7ZJW_295 | 1/S2/1734:1737, 1/S2/1799:1802 | Double sheared | geometric IL_4V88_471 NA | |
| IL_7ZJW_296 | 1/S2/1740:1742, 1/S2/1794:1796 | Isolated non-canonical cWW pair | geometric IL_5TBW_016 NA | |
| IL_7ZJW_371 | 1/S2/1743:1749, 1/S2/1787:1793 | No text annotation | ||
| IL_7ZJW_372 | 1/S2/1751:1752, 1/S2/1783:1785 | No text annotation | ||
| IL_7ZJW_299 | 1/S2/1752:1753, 1/S2/1781:1783 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7ZJW_001 | Isolated non-canonical cWW pair | ||
| IL_7ZJW_301 | No text annotation | ||
| IL_7ZJW_005 | No text annotation | ||
| IL_7ZJW_017 | No text annotation | ||
| IL_7ZJW_023 | No text annotation | ||
| IL_7ZJW_038 | Isolated near basepair | ||
| IL_7ZJW_304 | No text annotation | ||
| IL_7ZJW_047 | No text annotation | ||
| IL_7ZJW_052 | No text annotation | ||
| IL_7ZJW_063 | No text annotation | ||
| IL_7ZJW_074 | No text annotation | ||
| IL_7ZJW_075 | No text annotation | ||
| IL_7ZJW_076 | No text annotation | ||
| IL_7ZJW_078 | Tandem non-canonical cWW pairs | ||
| IL_7ZJW_080 | Tandem non-canonical cWW pairs | ||
| IL_7ZJW_315 | No text annotation | ||
| IL_7ZJW_096 | No text annotation | ||
| IL_7ZJW_108 | No text annotation | ||
| IL_7ZJW_109 | No text annotation | ||
| IL_7ZJW_110 | Major groove platform with extra pair | ||
| IL_7ZJW_115 | Isolated non-canonical cWW pair | ||
| IL_7ZJW_116 | Isolated non-canonical cWW pair | ||
| IL_7ZJW_119 | Stack and bulge | ||
| IL_7ZJW_122 | No text annotation | ||
| IL_7ZJW_125 | No text annotation | ||
| IL_7ZJW_126 | Not an internal loop | ||
| IL_7ZJW_127 | Not an internal loop | ||
| IL_7ZJW_129 | No text annotation | ||
| IL_7ZJW_130 | Stack and bulge | ||
| IL_7ZJW_132 | Isolated non-canonical cWW pair | ||
| IL_7ZJW_136 | Isolated non-canonical cWW pair | ||
| IL_7ZJW_326 | No text annotation | ||
| IL_7ZJW_140 | No text annotation | ||
| IL_7ZJW_148 | Decoding loop related | ||
| IL_7ZJW_149 | No text annotation | ||
| IL_7ZJW_151 | No text annotation | ||
| IL_7ZJW_153 | Not an internal loop | ||
| IL_7ZJW_156 | No text annotation | ||
| IL_7ZJW_160 | Isolated cWH basepair | ||
| IL_7ZJW_161 | Isolated non-canonical cWW pair | ||
| IL_7ZJW_163 | No text annotation | ||
| IL_7ZJW_165 | Isolated non-canonical cWW pair | ||
| IL_7ZJW_166 | Stack and bulge | ||
| IL_7ZJW_170 | No text annotation | ||
| IL_7ZJW_171 | Triple sheared related | ||
| IL_7ZJW_188 | Stack and bulge | ||
| IL_7ZJW_198 | No text annotation | ||
| IL_7ZJW_201 | No text annotation | ||
| IL_7ZJW_202 | Isolated non-canonical cWW pair | ||
| IL_7ZJW_208 | Isolated cWH basepair | ||
| IL_7ZJW_212 | No text annotation | ||
| IL_7ZJW_214 | No text annotation | ||
| IL_7ZJW_215 | No text annotation | ||
| IL_7ZJW_216 | Tandem non-canonical cWW pairs | ||
| IL_7ZJW_224 | No text annotation | ||
| IL_7ZJW_347 | C-loop with extra cWW pair | ||
| IL_7ZJW_228 | Triple non-canonical cWW pairs | ||
| IL_7ZJW_231 | Not an internal loop | ||
| IL_7ZJW_237 | Stack and bulge | ||
| IL_7ZJW_349 | No text annotation | ||
| IL_7ZJW_241 | No text annotation | ||
| IL_7ZJW_243 | No text annotation | ||
| IL_7ZJW_248 | Tandem non-canonical cWW pairs | ||
| IL_7ZJW_260 | Stack and bulge | ||
| IL_7ZJW_262 | Intercalated cWW | ||
| IL_7ZJW_264 | Isolated non-canonical cWW pair | ||
| IL_7ZJW_265 | Tandem non-canonical cWW pairs | ||
| IL_7ZJW_354 | No text annotation | ||
| IL_7ZJW_271 | Isolated non-canonical cWW pair | ||
| IL_7ZJW_274 | Isolated non-canonical cWW pair | ||
| IL_7ZJW_275 | No text annotation | ||
| IL_7ZJW_277 | Other IL | ||
| IL_7ZJW_278 | Isolated non-canonical cWW pair | ||
| IL_7ZJW_297 | No text annotation | ||
| IL_7ZJW_298 | Isolated non-canonical cWW pair | ||
| IL_7ZJW_361 | No text annotation | ||
| IL_7ZJW_300 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7ZJW_001 | 1/L5/112:116, 1/L5/155:160, 1/L5/275:278 | No text annotation | ||
| J3_7ZJW_030 | 1/L5/196:199, 1/L5/215:228, 1/L5/240:244 | No text annotation | ||
| J3_7ZJW_031 | 1/L5/351:367, 1/L5/374:379, 1/L8/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_7ZJW_002 | 1/L5/380:387, 1/L5/414:415, 1/L8/19:20 | No text annotation | geometric J3_5TBW_002 NA | |
| J3_7ZJW_032 | 1/L5/380:390, 1/L5/401:415, 1/L8/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_7ZJW_033 | 1/L5/451:455, 1/L5/695:699, 1/L5/1236:1240 | No text annotation | ||
| J3_7ZJW_003 | 1/L5/1486:1492, 1/L5/1577:1579, 1/L5/1595:1598 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_7ZJW_004 | 1/L5/1501:1503, 1/L5/1535:1539, 1/L5/1564:1567 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_7ZJW_034 | 1/L5/1665:1666, 1/L5/1741:1745, 1/L5/1771:1776 | No text annotation | homologous J3_8P9A_051 J3_09667.1 | |
| J3_7ZJW_005 | 1/L5/1908:1910, 1/L5/1934:1944, 1/L5/1953:1957 | No text annotation | ||
| J3_7ZJW_006 | 1/L5/2236:2242, 1/L5/2648:2650, 1/L5/2662:2665 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_7ZJW_007 | 1/L5/2245:2248, 1/L5/2628:2634, 1/L5/2643:2645 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_7ZJW_008 | 1/L5/2283:2288, 1/L5/2358:2362, 1/L5/2379:2380 | No text annotation | homologous J3_8P9A_055 J3_31965.2 | |
| J3_7ZJW_035 | 1/L5/2294:2299, 1/L5/2308:2319, 1/L5/2344:2351 | No text annotation | ||
| J3_7ZJW_009 | 1/L5/2394:2398, 1/L5/2415:2418, 1/L5/2600:2610 | No text annotation | ||
| J3_7ZJW_010 | 1/L5/2418:2419, 1/L5/2428:2432, 1/L5/2599:2600 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_7ZJW_036 | 1/L5/2441:2445, 1/L5/2580:2581, 1/L5/2585:2590 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_7ZJW_011 | 1/L5/3669:3671, 1/L5/3802:3806, 1/L5/3914:3919 | No text annotation | geometric J3_8VTW_006 NA | |
| J3_7ZJW_037 | 1/L5/3820:3829, 1/L5/3836:3857, 1/L5/3901:3904 | No text annotation | ||
| J3_7ZJW_038 | 1/L5/3974:3976, 1/L5/4077:4088, 1/L5/4116:4121 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_7ZJW_012 | 1/L5/3987:3989, 1/L5/4013:4015, 1/L5/4024:4029 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_7ZJW_013 | 1/L5/4209:4212, 1/L5/4237:4239, 1/L5/4253:4259 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_7ZJW_039 | 1/L5/4498:4501, 1/L5/4618:4622, 1/L5/4675:4687 | No text annotation | ||
| J3_7ZJW_040 | 1/L5/4709:4711, 1/L5/4725:4730, 1/L5/4799:4802 | No text annotation | ||
| J3_7ZJW_015 | 1/L7/9:14, 1/L7/65:66, 1/L7/109:110 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_7ZJW_016 | 1/L8/44:45, 1/L8/58:64, 1/L8/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_7ZJW_041 | 1/S2/40:41, 1/S2/482:488, 1/S2/513:515 | No text annotation | geometric J3_4V88_078 NA | |
| J3_7ZJW_042 | 1/S2/40:47, 1/S2/480:488, 1/S2/513:515 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
| J3_7ZJW_043 | 1/S2/223:238, 1/S2/283:289, 1/S2/296:299 | No text annotation | ||
| J3_7ZJW_018 | 1/S2/683:686, 1/S2/918:923, 1/S2/1023:1024 | No text annotation | ||
| J3_7ZJW_044 | 1/S2/683:686, 1/S2/918:924, 1/S2/1020:1024 | No text annotation | ||
| J3_7ZJW_019 | 1/S2/817:820, 1/S2/830:832, 1/S2/844:849 | No text annotation | homologous J3_8C3A_035 NA | |
| J3_7ZJW_020 | 1/S2/938:942, 1/S2/986:994, 1/S2/1001:1006 | No text annotation | ||
| J3_7ZJW_021 | 1/S2/1095:1097, 1/S2/1137:1141, 1/S2/1148:1152 | No text annotation | ||
| J3_7ZJW_022 | 1/S2/1219:1222, 1/S2/1646:1652, 1/S2/1674:1681 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_7ZJW_023 | 1/S2/1226:1229, 1/S2/1531:1533, 1/S2/1639:1642 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_7ZJW_045 | 1/S2/1238:1245, 1/S2/1256:1267, 1/S2/1517:1521 | No text annotation | homologous J3_8P9A_078 J3_83516.4 | |
| J3_7ZJW_025 | 1/S2/1273:1278, 1/S2/1321:1325, 1/S2/1505:1511 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_7ZJW_026 | 1/S2/1341:1346, 1/S2/1385:1390, 1/S2/1482:1487 | No text annotation | homologous J3_8P9A_080 J3_99563.1 | |
| J3_7ZJW_027 | 1/S2/1351:1352, 1/S2/1361:1364, 1/S2/1376:1380 | No text annotation | homologous J3_8P9A_081 J3_76043.3 | |
| J3_7ZJW_046 | 1/S2/1392:1396, 1/S2/1451:1457, 1/S2/1471:1480 | No text annotation | ||
| J3_7ZJW_029 | 1/S2/1533:1537, 1/S2/1598:1605, 1/S2/1636:1639 | No text annotation | homologous J3_8C3A_044 NA | |
| J4_7ZJW_001 | 1/L5/111:112, 1/L5/278:283, 1/L5/304:310, 1/L5/327:330 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_7ZJW_002 | 1/L5/196:199, 1/L5/215:222, 1/L5/226:228, 1/L5/240:244 | No text annotation | ||
| J4_7ZJW_003 | 1/L5/706:707, 1/L5/855:861, 1/L5/871:878, 1/L5/1222:1228 | No text annotation | ||
| J4_7ZJW_004 | 1/L5/883:885, 1/L5/985:987, 1/L5/1126:1127, 1/L5/1212:1217 | No text annotation | ||
| J4_7ZJW_005 | 1/L5/2208:2214, 1/L5/2232:2234, 1/L5/2667:2672, 1/L5/3588:3589 | No text annotation | ||
| J4_7ZJW_006 | 1/L5/2249:2253, 1/L5/2277:2282, 1/L5/2381:2382, 1/L5/2620:2627 | No text annotation | ||
| J4_7ZJW_007 | 1/L5/2252:2253, 1/L5/2277:2282, 1/L5/2381:2382, 1/L5/2620:2626 | No text annotation | ||
| J4_7ZJW_008 | 1/L5/2294:2299, 1/L5/2308:2312, 1/L5/2314:2319, 1/L5/2344:2351 | No text annotation | ||
| J4_7ZJW_009 | 1/L5/2461:2462, 1/L5/2480:2485, 1/L5/2535:2541, 1/L5/2561:2562 | No text annotation | ||
| J4_7ZJW_010 | 1/L5/3366:3370, 1/L5/3382:3386, 1/L5/3422:3426, 1/L5/3553:3558 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_7ZJW_011 | 1/L5/3428:3430, 1/L5/3484:3485, 1/L5/3503:3512, 1/L5/3546:3551 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_7ZJW_012 | 1/L5/3977:3981, 1/L5/4035:4037, 1/L5/4064:4065, 1/L5/4074:4076 | No text annotation | ||
| J4_7ZJW_013 | 1/L5/3977:3981, 1/L5/4035:4039, 1/L5/4063:4065, 1/L5/4074:4076 | No text annotation | homologous J4_8P9A_019 J4_04930.6 | |
| J4_7ZJW_014 | 1/L5/4333:4336, 1/L5/4366:4367, 1/L5/4422:4424, 1/L5/4458:4461 | No text annotation | ||
| J4_7ZJW_015 | 1/S2/98:106, 1/S2/356:358, 1/S2/406:410, 1/S2/432:433 | No text annotation | homologous J4_8P9A_021 J4_15241.1 | |
| J4_7ZJW_016 | 1/S2/672:674, 1/S2/1033:1038, 1/S2/1079:1090, 1/S2/1161:1162 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
| J5_7ZJW_001 | 1/F/9:13, 1/F/27:29, 1/F/45:48, 1/F/61:63, 1/F/77:78 | No text annotation | ||
| J5_7ZJW_002 | 1/L5/19:21, 1/L8/35:42, 1/L8/101:106, 1/L8/113:114, 1/L8/136:138 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_7ZJW_003 | 1/L5/1279:1284, 1/L5/1471:1474, 1/L5/1613:1616, 1/L5/2131:2133, 1/L5/2188:2194 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_7ZJW_004 | 1/L5/2698:2706, 1/L5/2730:2731, 1/L5/3345:3346, 1/L5/3350:3358, 1/L5/3567:3569 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_7ZJW_005 | 1/L5/3635:3642, 1/L5/4138:4146, 1/L5/4190:4199, 1/L5/4274:4280, 1/L5/4298:4303 | No text annotation | ||
| J5_7ZJW_006 | 1/L5/3652:3655, 1/L5/3934:3937, 1/L5/3950:3951, 1/L5/3973:3974, 1/L5/4121:4127 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J5_7ZJW_007 | 1/S2/30:34, 1/S2/522:528, 1/S2/559:564, 1/S2/593:596, 1/S2/642:645 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_7ZJW_008 | 1/S2/30:34, 1/S2/522:528, 1/S2/559:566, 1/S2/586:596, 1/S2/642:645 | No text annotation | ||
| J5_7ZJW_009 | 1/S2/53:56, 1/S2/89:96, 1/S2/435:437, 1/S2/458:460, 1/S2/471:475 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_7ZJW_010 | 1/S2/123:129, 1/S2/183:185, 1/S2/214:215, 1/S2/311:313, 1/S2/338:342 | No text annotation | ||
| J6_7ZJW_001 | 1/L5/21:26, 1/L5/57:67, 1/L5/74:78, 1/L5/105:109, 1/L5/332:339, 1/L8/33:35 | No text annotation | ||
| J6_7ZJW_002 | 1/L5/1296:1299, 1/L5/1328:1332, 1/L5/1339:1343, 1/L5/1373:1376, 1/L5/1419:1421, 1/L5/1454:1459 | No text annotation | ||
| J6_7ZJW_003 | 1/L5/3652:3655, 1/L5/3934:3937, 1/L5/3950:3951, 1/L5/3973:3976, 1/L5/4077:4088, 1/L5/4116:4127 | No text annotation | ||
| J7_7ZJW_001 | 1/L5/1621:1626, 1/L5/1639:1640, 1/L5/1791:1794, 1/L5/1818:1823, 1/L5/1834:1838, 1/L5/2016:2017, 1/L5/2121:2126 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7ZJW_014 | No text annotation | ||
| J3_7ZJW_017 | No text annotation | ||
| J3_7ZJW_024 | No text annotation | ||
| J3_7ZJW_028 | No text annotation |
Coloring options: